Mir-22-P2

MirGeneDB ID

Cel-Mir-22-P2

Family name

MIR-22 (all species)

Seed

AGCUGCC

Species

Roundworm (Caenorhabditis elegans)

MiRBase ID

cel-mir-1822

Paralogues

Orthologues

Aae-Mir-22-P2 Aga-Mir-22-P2 Agr-Mir-22-P2 Asu-Mir-22-P2 Bfl-Mir-22-P2a Bfl-Mir-22-P2b Bfl-Mir-22-P2c Bge-Mir-22-P2 Bla-Mir-22-P2a Bla-Mir-22-P2b Bla-Mir-22-P2c Cbr-Mir-22-P2-v1 Cbr-Mir-22-P2-v2 Csc-Mir-22-P2 Cte-Mir-22-P2 Dan-Mir-22-P2 Dlo-Mir-22-P2 Dma-Mir-22-P2 Dme-Mir-22-P2 Dmo-Mir-22-P2 Dpu-Mir-22-P2 Dsi-Mir-22-P2 Dya-Mir-22-P2 Eba-Mir-22-P2 Esc-Mir-22-P2 Gpa-Mir-22-P2 Hme-Mir-22-P2 Hru-Mir-22-P2 Isc-Mir-22-P2 Lan-Mir-22-P2 Lgi-Mir-22-P2 Lhy-Mir-22-P2 Llo-Mir-22-P2 Lpo-Mir-22-P2f Lpo-Mir-22-P2g Lpo-Mir-22-P2h Lpo-Mir-22-P2i Mgi-Mir-22-P2 Mom-Mir-22-P2 Npo-Mir-22-P2 Ofu-Mir-22-P2j Ofu-Mir-22-P2k Ovu-Mir-22-P2 Pau-Mir-22-P2 Pca-Mir-22-P2 Pcr-Mir-22-P2l Pcr-Mir-22-P2m Pdu-Mir-22-P2 Pfl-Mir-22-P2 Pmi-Mir-22-P2 Pve-Mir-22-P2 Rph-Mir-22-P2 Sko-Mir-22-P2 Snu-Mir-22-P2 Spu-Mir-22-P2 Tca-Mir-22-P2-v1 Tca-Mir-22-P2-v2 Tur-Mir-22-P2 War-Mir-22-P2 Xbo-Mir-22-P2d Xbo-Mir-22-P2e

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(ce11)

chrII: 6015552-6015612 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

ACUUUUAUUCUGAUUCUUGAAAACUCCAAUAGUUUCUCUGGGAAAGCUAUCGGCCAAAUUUAACUGUCCGAGCUGCCCUCAGAAAAACUCUUGGCUCAUCGAGAAAUUCUAAAAUCAUAUU

Get precursor sequence

Structure

        10           20        30        40         50        60
ACUUUUAUUCUGAUUCU---|  AAACU    U     C    -  AA   UA    CCAAAU 
                    UGA     CCAA AGUUU UCUG GG  AGC  UCGG      U
                    GCU     GGUU UCAAA AGAC CC  UCG  AGCC      U
UUAUACUAAAAUCUUAAAGA^  ACUC-    C     A    U  CG   --    UGUCAA 
 .       110       100         90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Da	Ea	Mi	Wi	Yo	Yo

Star sequence

Cel-Mir-22-P2_5p*

mirBase accession

MIMAT0015266

Sequence

0- AGUUUCUCUGGGAAAGCUAUCGG -23

Get sequence

Proposed targets

microrna.org: MIMAT0015266

Mature sequence

Cel-Mir-22-P2_3p

mirBase accession

MIMAT0006589

Sequence

39- GAGCUGCCCUCAGAAAAACUCU -61

Get sequence

Proposed targets

microrna.org: MIMAT0006589
TargetScanWorm: cel-miR-1822