Mir-22-P2e

MirGeneDB ID

Xbo-Mir-22-P2e

Family name

MIR-22 (all species)

Seed

CAGCUCC

Species

Xenoturbella (Xenoturbella bocki)

MiRBase ID

Paralogues

Xbo-Mir-22-P2d

Orthologues

Aae-Mir-22-P2 Aga-Mir-22-P2 Agr-Mir-22-P2 Asu-Mir-22-P2 Bge-Mir-22-P2 Cbr-Mir-22-P2-v1 Cbr-Mir-22-P2-v2 Cel-Mir-22-P2 Csc-Mir-22-P2 Cte-Mir-22-P2 Dan-Mir-22-P2 Dlo-Mir-22-P2 Dma-Mir-22-P2 Dme-Mir-22-P2 Dmo-Mir-22-P2 Dpu-Mir-22-P2 Dsi-Mir-22-P2 Dya-Mir-22-P2 Eba-Mir-22-P2 Esc-Mir-22-P2 Gpa-Mir-22-P2 Hme-Mir-22-P2 Hru-Mir-22-P2 Isc-Mir-22-P2 Lan-Mir-22-P2 Lgi-Mir-22-P2 Lhy-Mir-22-P2 Llo-Mir-22-P2 Mgi-Mir-22-P2 Mom-Mir-22-P2 Npo-Mir-22-P2 Ovu-Mir-22-P2 Pau-Mir-22-P2 Pca-Mir-22-P2 Pdu-Mir-22-P2 Pfl-Mir-22-P2 Pmi-Mir-22-P2 Pve-Mir-22-P2 Rph-Mir-22-P2 Sko-Mir-22-P2 Snu-Mir-22-P2 Spu-Mir-22-P2 Tca-Mir-22-P2-v1 Tca-Mir-22-P2-v2 Tur-Mir-22-P2 War-Mir-22-P2

Node of Origin (locus)

X. bocki

Node of Origin (family)

Bilateria

Genome context
(genome.xe)

scaffold1487: 40588-40647 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGGUAGGGGAGUGGUCUGUGGUUUAUACAUCUCACUAGCCUGGUCGCCGACAGUAUGUCAGUACUCUGUCAGCUCCAUGUCUGGUGAGGUGAAUAAAUCAUACAUACAUCAUUACAUUGU

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Structure

        10          20        30         40        50         
GGGUAGGGGAGUGGUCU--         A           -|C   UC  C    GUAUGU 
                   GUGGUUUAU CAUCUCACUAG C UGG  GC GACA      C
                   UACUAAAUA GUGGAGUGGUC G ACC  CG CUGU      A
UGUUACAUUACUACAUACA         A           U^U   U-  A    CUCAUG 
.       110       100        90        80         70        60

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

To	To	To

Star sequence

Xbo-Mir-22-P2e_5p*

mirBase accession

None

Sequence

0- CUCACUAGCCUGGUCGCCGACA -22

Get sequence

Mature sequence

Xbo-Mir-22-P2e_3p

mirBase accession

None

Sequence

38- UCAGCUCCAUGUCUGGUGAGGU -60

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