Mir-22-P2

MirGeneDB ID

Mgi-Mir-22-P2

Family name

MIR-22 (all species)

Seed

AGCUGCC

Species

Pacific oyster (Magallana gigas)

MiRBase ID

Paralogues

Mgi-Mir-22-P1

Orthologues

Aae-Mir-22-P2 Aga-Mir-22-P2 Agr-Mir-22-P2 Asu-Mir-22-P2 Bfl-Mir-22-P2a Bfl-Mir-22-P2b Bfl-Mir-22-P2c Bge-Mir-22-P2 Bla-Mir-22-P2a Bla-Mir-22-P2b Bla-Mir-22-P2c Cbr-Mir-22-P2-v1 Cbr-Mir-22-P2-v2 Cel-Mir-22-P2 Csc-Mir-22-P2 Cte-Mir-22-P2 Dan-Mir-22-P2 Dlo-Mir-22-P2 Dma-Mir-22-P2 Dme-Mir-22-P2 Dmo-Mir-22-P2 Dpu-Mir-22-P2 Dsi-Mir-22-P2 Dya-Mir-22-P2 Eba-Mir-22-P2 Esc-Mir-22-P2 Gpa-Mir-22-P2 Hme-Mir-22-P2 Hru-Mir-22-P2 Isc-Mir-22-P2 Lan-Mir-22-P2 Lgi-Mir-22-P2 Lhy-Mir-22-P2 Llo-Mir-22-P2 Lpo-Mir-22-P2f Lpo-Mir-22-P2g Lpo-Mir-22-P2h Lpo-Mir-22-P2i Mom-Mir-22-P2 Npo-Mir-22-P2 Ofu-Mir-22-P2j Ofu-Mir-22-P2k Ovu-Mir-22-P2 Pau-Mir-22-P2 Pca-Mir-22-P2 Pcr-Mir-22-P2l Pcr-Mir-22-P2m Pdu-Mir-22-P2 Pfl-Mir-22-P2 Pmi-Mir-22-P2 Pve-Mir-22-P2 Rph-Mir-22-P2 Sko-Mir-22-P2 Snu-Mir-22-P2 Spu-Mir-22-P2 Tca-Mir-22-P2-v1 Tca-Mir-22-P2-v2 Tur-Mir-22-P2 War-Mir-22-P2 Xbo-Mir-22-P2d Xbo-Mir-22-P2e

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(CGI_GCA_000297895.1)

scaffold726: 81942-82005 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

GCUUUUUCUCAAUGACAAGCUUGGAAUGGUAGUUUUUCCUUUGGCCAGCUAUCUCGUGCAAUUCUGAGCUGAGAGCUGCCAAAUGAAGGGCUGUUGUUUCUGCUCACCAAGCAAACUUCAUCAA

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Structure

        10           20        30        40        50        60   
GCUUUUUCUCAAUGACA---|  UU     GG         C      C   UA    GUGCAAU 
                    AGC  GGAAU  UAGUUUUUC UUUGGC AGC  UCUC       \
                    UCG  CUUUG  GUCGGGAAG AAACCG UCG  AGAG       U
AACUACUUCAAACGAACCAC^  U-     UU         U      -   --    UCGAGUC 
  120       110        100        90        80           70

Deep sequencing

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3' NTU

Motifs

UGUG in loop

Tissue expression

A-	D-	D-	Eg	F-	Gi	He	Ju	L-	Ma	Ma	Pe	Re	Sp	Um	Ea	Fe	Ha	La	Ma

Star sequence

Mgi-Mir-22-P2_5p*

mirBase accession

None

Sequence

0- AGUUUUUCCUUUGGCCAGCUAUCUC -25

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Mature sequence

Mgi-Mir-22-P2_3p

mirBase accession

None

Sequence

42- GAGCUGCCAAAUGAAGGGCUGU -64

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