Mir-22-P2h

MirGeneDB ID

Lpo-Mir-22-P2h

Family name

MIR-22 (all species)

Seed

AGCUGCC

Species

Atlantic horseshoe crab (Limulus polyphemus)

MiRBase ID

Paralogues

Lpo-Mir-22-P2f Lpo-Mir-22-P2g Lpo-Mir-22-P2i

Orthologues

Aae-Mir-22-P2 Aga-Mir-22-P2 Agr-Mir-22-P2 Asu-Mir-22-P2 Bge-Mir-22-P2 Cbr-Mir-22-P2-v1 Cbr-Mir-22-P2-v2 Cel-Mir-22-P2 Csc-Mir-22-P2 Cte-Mir-22-P2 Dan-Mir-22-P2 Dlo-Mir-22-P2 Dma-Mir-22-P2 Dme-Mir-22-P2 Dmo-Mir-22-P2 Dpu-Mir-22-P2 Dsi-Mir-22-P2 Dya-Mir-22-P2 Eba-Mir-22-P2 Esc-Mir-22-P2 Gpa-Mir-22-P2 Hme-Mir-22-P2 Hru-Mir-22-P2 Isc-Mir-22-P2 Lan-Mir-22-P2 Lgi-Mir-22-P2 Lhy-Mir-22-P2 Llo-Mir-22-P2 Mgi-Mir-22-P2 Mom-Mir-22-P2 Npo-Mir-22-P2 Ovu-Mir-22-P2 Pau-Mir-22-P2 Pca-Mir-22-P2 Pdu-Mir-22-P2 Pfl-Mir-22-P2 Pmi-Mir-22-P2 Pve-Mir-22-P2 Rph-Mir-22-P2 Sko-Mir-22-P2 Snu-Mir-22-P2 Spu-Mir-22-P2 Tca-Mir-22-P2-v1 Tca-Mir-22-P2-v2 Tur-Mir-22-P2 War-Mir-22-P2

Node of Origin (locus)

L. polyphemus

Node of Origin (family)

Bilateria

Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)

NW_013666188.1: 65508-65566 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

UAUUCUACGAGAUGUGGACCCUUCCAGUGUAGUCCUUCAUUGGGGGUGCUUGCUGCCUUUGCUAGGCGAGCUGCCCAGUGAAGGGCUGUUCUGUCGGGGAAUGGUCAACAAUAUAUUCU

Get precursor sequence

Structure

        10          20        30        40        50         
UAUUCUACGAGAUGUGGA--|   UC   UG               GGU      UGCCU 
                    CCCU  CAG  UAGUCCUUCAUUGGG   GCUUGC     U
                    GGGG  GUC  GUCGGGAAGUGACCC   CGAGCG     U
UCUUAUAUAACAACUGGUAA^   CU   UU               GU-      GAUCG 
       110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Fe	Fe	Fe	Ma	Ma	To

Star sequence

Lpo-Mir-22-P2h_5p*

mirBase accession

None

Sequence

0- AGUCCUUCAUUGGGGGUGCUUGC -23

Get sequence

Mature sequence

Lpo-Mir-22-P2h_3p

mirBase accession

None

Sequence

37- GAGCUGCCCAGUGAAGGGCUGU -59

Get sequence