MirGeneDB 3.0

MirGeneDB ID

Pmi-Mir-22-P2

Family name MIR-22 (all species)
Seed CAGCUGC
Species Bat starfish (Patiria miniata)
MiRBase ID pmi-mir-22
Paralogues
Orthologues Aae-Mir-22-P2  Aga-Mir-22-P2  Agr-Mir-22-P2  Asu-Mir-22-P2  Bfl-Mir-22-P2a  Bfl-Mir-22-P2b  Bfl-Mir-22-P2c  Bge-Mir-22-P2  Bla-Mir-22-P2a  Bla-Mir-22-P2b  Bla-Mir-22-P2c  Cbr-Mir-22-P2-v1  Cbr-Mir-22-P2-v2  Cel-Mir-22-P2  Csc-Mir-22-P2  Cte-Mir-22-P2  Dan-Mir-22-P2  Dlo-Mir-22-P2  Dma-Mir-22-P2  Dme-Mir-22-P2  Dmo-Mir-22-P2  Dpu-Mir-22-P2  Dsi-Mir-22-P2  Dya-Mir-22-P2  Eba-Mir-22-P2  Esc-Mir-22-P2  Gpa-Mir-22-P2  Hme-Mir-22-P2  Hru-Mir-22-P2  Isc-Mir-22-P2  Lan-Mir-22-P2  Lgi-Mir-22-P2  Lhy-Mir-22-P2  Llo-Mir-22-P2  Lpo-Mir-22-P2f  Lpo-Mir-22-P2g  Lpo-Mir-22-P2h  Lpo-Mir-22-P2i  Mgi-Mir-22-P2  Mom-Mir-22-P2  Npo-Mir-22-P2  Ofu-Mir-22-P2j  Ofu-Mir-22-P2k  Ovu-Mir-22-P2  Pau-Mir-22-P2  Pca-Mir-22-P2  Pcr-Mir-22-P2l  Pcr-Mir-22-P2m  Pdu-Mir-22-P2  Pfl-Mir-22-P2  Pve-Mir-22-P2  Rph-Mir-22-P2  Sko-Mir-22-P2  Snu-Mir-22-P2  Spu-Mir-22-P2  Tca-Mir-22-P2-v1  Tca-Mir-22-P2-v2  Tur-Mir-22-P2  War-Mir-22-P2  Xbo-Mir-22-P2d  Xbo-Mir-22-P2e 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Pmin1)
JH783623.1: 312-377 [+]
Clustered miRNAs
(< 50kb from Mir-22-P2)
Mir-22-P2 JH783623.1: 312-377 [+]
Mir-103 JH783623.1: 1378-1440 [+]
Precursor
(pre-Mir +30nt flank)
CCCACGUUUGUUUUUGUCUGCCGUGCGGUCACAUUUCACUGGUGGGCUGAUGCGUCCGAUCUUUCUAAACACCAUCAGCUGCCCGGUGAAGUGUAGUCGCGCGGACAGGUGGUCUGCGAAGUAUCU
Get precursor sequence
Structure
        10         20         30        40        50        60  
CCCACGUUUGUUUUUGU-   -|       UC            UG        CGUCCGAUC 
                  CUG CCGUGCGG  ACAUUUCACUGG  GGCUGAUG         U
                  GAC GGCGCGCU  UGUGAAGUGGCC  UCGACUAC         U
UCUAUGAAGCGUCUGGUG   A^       GA            CG        CACAAAUCU 
    120       110       100        90        80        70
Deep sequencing
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CommentIt is unclear if this paralogue group represents the ancestral Mir-22-P2 gene that is seed shifted or a new paralogue derived from the ancestral P1 gene. It is also unclear if this gene is orthologous to the Mir-22-o1 gene in Branchiostoma and Xenoturbella.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Em To
Star sequence

Pmi-Mir-22-P2_5p*

mirBase accessionNone
Sequence
0- ACAUUUCACUGGUGGGCUGAUG -22
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Mature sequence

Pmi-Mir-22-P2_3p

mirBase accessionMIMAT0032144
Sequence
44- UCAGCUGCCCGGUGAAGUGUAG -66
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