MirGeneDB ID | Asu-Mir-22-P2 |
Family name |
MIR-22 (all species) |
Seed |
AGCUGCC |
Species |
Large roundworm (Ascaris suum) |
MiRBase ID |
asu-mir-1822
|
Paralogues |
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Orthologues |
Aae-Mir-22-P2
Bge-Mir-22-P2
Cbr-Mir-22-P2-v1
Cbr-Mir-22-P2-v2
Cel-Mir-22-P2
Cgi-Mir-22-P2
Csc-Mir-22-P2
Cte-Mir-22-P2
Dan-Mir-22-P2
Dma-Mir-22-P2
Dme-Mir-22-P2
Dmo-Mir-22-P2
Dpu-Mir-22-P2
Dsi-Mir-22-P2
Dya-Mir-22-P2
Esc-Mir-22-P2
Hme-Mir-22-P2
Isc-Mir-22-P2
Lan-Mir-22-P2
Lgi-Mir-22-P2
Lpo-Mir-22-P2a
Lpo-Mir-22-P2b
Lpo-Mir-22-P2c
Lpo-Mir-22-P2d
Npo-Mir-22-P2
Ovu-Mir-22-P2
Pfl-Mir-22-o2
Pmi-Mir-22-o2
Sko-Mir-22-o2
Spu-Mir-22-o2
Tca-Mir-22-P2-v1
Tca-Mir-22-P2-v2
|
Node of Origin (locus) |
Bilateria
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Node of Origin (family) |
Bilateria
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Genome context (ASU_PRJNA80881_plustraces) |
Scaffold1417: 35061-35121 [-]
|
Precursor (pre-Mir +30nt flank) |
UUAAAGCUAUACUGCUUGCUUCCUAGCGUACGUCUUUCAUUCGGUUCAGCUAUCGGUGAAUUUCGCUCCGAGCUGCCCUAUGAAGGACUGUCGCUAUUACGCUUUUCCACCCUACUCUAUC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UUAAAGCUAUACUGCUU--| UUCC U - UC UU UA UGAAU
GC UAGCG AC GUCUUUCAU GG CAGC UCGG \
CG AUCGC UG CAGGAAGUA CC GUCG AGCC U
CUAUCUCAUCCCACCUUUU^ CAUU - U UC -- -- UCGCU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
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0h |
11 |
12 |
24 |
46 |
64 |
6d |
7d |
8d |
96 |
Em |
La |
Ov |
Se |
Sp |
Te |
Zy |
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Star sequence |
Asu-Mir-22-P2_5p* |
mirBase accession | MIMAT0021535 |
Sequence |
0- CGUCUUUCAUUCGGUUCAGCUAUCGG -26
Get sequence
|
Mature sequence |
Asu-Mir-22-P2_3p |
mirBase accession | MIMAT0021536 |
Sequence |
39- GAGCUGCCCUAUGAAGGACUGU -61
Get sequence
|