Mir-22-P2l

MirGeneDB ID

Pcr-Mir-22-P2l

Family name

MIR-22 (all species)

Seed

AGCUGCC

Species

Tiger flatworm (Prostheceraeus crozieri )

MiRBase ID

Paralogues

Pcr-Mir-22-P1 Pcr-Mir-22-P2m

Orthologues

Aae-Mir-22-P2 Aga-Mir-22-P2 Agr-Mir-22-P2 Asu-Mir-22-P2 Bge-Mir-22-P2 Cbr-Mir-22-P2-v1 Cbr-Mir-22-P2-v2 Cel-Mir-22-P2 Csc-Mir-22-P2 Cte-Mir-22-P2 Dan-Mir-22-P2 Dlo-Mir-22-P2 Dma-Mir-22-P2 Dme-Mir-22-P2 Dmo-Mir-22-P2 Dpu-Mir-22-P2 Dsi-Mir-22-P2 Dya-Mir-22-P2 Eba-Mir-22-P2 Esc-Mir-22-P2 Gpa-Mir-22-P2 Hme-Mir-22-P2 Hru-Mir-22-P2 Isc-Mir-22-P2 Lan-Mir-22-P2 Lgi-Mir-22-P2 Lhy-Mir-22-P2 Llo-Mir-22-P2 Mgi-Mir-22-P2 Mom-Mir-22-P2 Npo-Mir-22-P2 Ovu-Mir-22-P2 Pau-Mir-22-P2 Pca-Mir-22-P2 Pdu-Mir-22-P2 Pfl-Mir-22-P2 Pmi-Mir-22-P2 Pve-Mir-22-P2 Rph-Mir-22-P2 Sko-Mir-22-P2 Snu-Mir-22-P2 Spu-Mir-22-P2 Tca-Mir-22-P2-v1 Tca-Mir-22-P2-v2 Tur-Mir-22-P2 War-Mir-22-P2

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(GCA_907163375.1_PROCRO_GENOME_genomic)

CAJQUW010003990.1: 30259-30318 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

UCAGGGUAUUCAAGGUAUUGCUAGCGGUUCCGCCUUUUCUCUGAUCAGCUGUUCUAUUGAUUUUGAAAUAGCUGCCAGUGAAAGGGCUGAAUUGGUGUAGCAUUGUGCGACCUGCUCCUU

Get precursor sequence

Structure

        10        20          30        40        50          
UCAGGGUAUUCAAGGUAU     G--|     C        U   AU        CUAUUG 
                  UGCUA   CGGUUC GCCUUUUC CUG  CAGCUGUU      \
                  ACGAU   GUUAAG CGGGAAAG GAC  GUCGAUAA      A
UUCCUCGUCCAGCGUGUU     GUG^     U        U   C-        AGUUUU 
.       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Star sequence

Pcr-Mir-22-P2l_5p*

mirBase accession

None

Sequence

0- CGCCUUUUCUCUGAUCAGCUGUU -23

Get sequence

Mature sequence

Pcr-Mir-22-P2l_3p

mirBase accession

None

Sequence

38- UAGCUGCCAGUGAAAGGGCUGA -60

Get sequence