MirGeneDB ID | Rph-Mir-2001 |
Family name |
MIR-2001 (all species) |
Seed |
UUGUGAC |
Species |
Japanese carpet shell (Ruditapes philippinarum) |
MiRBase ID |
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Paralogues |
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Orthologues |
Agr-Mir-2001
Bge-Mir-2001-P1
Bge-Mir-2001-P2
Cbr-Mir-2001
Cel-Mir-2001
Csc-Mir-2001
Cte-Mir-2001-v1
Cte-Mir-2001-v2
Dan-Mir-2001
Dgr-Mir-2001
Dlo-Mir-2001-v1
Dlo-Mir-2001-v2
Dme-Mir-2001
Dmo-Mir-2001
Dsi-Mir-2001
Dya-Mir-2001
Eba-Mir-2001
Gpa-Mir-2001
Gsa-Mir-2001
Hme-Mir-2001
Hmi-Mir-2001
Hru-Mir-2001
Isc-Mir-2001
Lan-Mir-2001-P3
Lan-Mir-2001-P4
Lgi-Mir-2001
Lhy-Mir-2001
Llo-Mir-2001
Lpo-Mir-2001
Mgi-Mir-2001
Mom-Mir-2001
Npo-Mir-2001
Ofu-Mir-2001
Pau-Mir-2001
Pcr-Mir-2001
Pdu-Mir-2001
Pfl-Mir-2001
Pmi-Mir-2001
Pve-Mir-2001
Sko-Mir-2001
Snu-Mir-2001
Spu-Mir-2001
Sro-Mir-2001
Tur-Mir-2001
War-Mir-2001
Xbo-Mir-2001
|
Node of Origin (locus) |
Bilateria
|
Node of Origin (family) |
Bilateria
|
Genome context (Ruditapes_GCA_009026015) |
CM018525.1: 43444147-43444207 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UAGUCUAUGAUUGGCAGGGCUGAUGUCUUUGUUGUGACCGUUGUAAUGGGUAUAUAAUAUUUACAGUACUCAUUAUAACGUACACAAAUGUUGACACAGUCGUUAACAACGAGAAACCAUG
Get precursor sequence
|
Structure | 10 20 30 40 50
UAGUCUAUGAUUGGCAG---| A UUUG- AC UAUAAU
GGCUG UGUC UUGUG CGUUGUAAUGGGUA A
CUGAC ACAG AACAC GCAAUAUUACUCAU U
GUACCAAAGAGCAACAAUUG^ - UUGUA AU GACAUU
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
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Mature sequence |
Rph-Mir-2001_5p |
mirBase accession | None |
Sequence |
0- GUUGUGACCGUUGUAAUGGGUA -22
Get sequence
|
Star sequence |
Rph-Mir-2001_3p* |
mirBase accession | None |
Sequence |
38- CUCAUUAUAACGUACACAAAUGU -61
Get sequence
|