MirGeneDB 3.0
MirGeneDB ID

Gsa-Mir-2001

Family name MIR-2001 (all species)
Seed UGUGACC
Species Russian doll killer (Gyrodactylus salaris)
MiRBase ID gsa-mir-2001
Paralogues
Orthologues Agr-Mir-2001  Bge-Mir-2001-P1  Bge-Mir-2001-P2  Cbr-Mir-2001  Cel-Mir-2001  Csc-Mir-2001  Cte-Mir-2001-v1  Cte-Mir-2001-v2  Dan-Mir-2001  Dgr-Mir-2001  Dlo-Mir-2001-v1  Dlo-Mir-2001-v2  Dme-Mir-2001  Dmo-Mir-2001  Dsi-Mir-2001  Dya-Mir-2001  Eba-Mir-2001  Gpa-Mir-2001  Hme-Mir-2001  Hmi-Mir-2001  Hru-Mir-2001  Isc-Mir-2001  Lan-Mir-2001-P3  Lan-Mir-2001-P4  Lgi-Mir-2001  Lhy-Mir-2001  Llo-Mir-2001  Lpo-Mir-2001  Mgi-Mir-2001  Mom-Mir-2001  Npo-Mir-2001  Ofu-Mir-2001  Pau-Mir-2001  Pcr-Mir-2001  Pdu-Mir-2001  Pfl-Mir-2001  Pmi-Mir-2001  Pve-Mir-2001  Rph-Mir-2001  Sko-Mir-2001  Snu-Mir-2001  Spu-Mir-2001  Sro-Mir-2001  Tur-Mir-2001  War-Mir-2001  Xbo-Mir-2001 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(gyrodactylus_salaris.PRJNA244375.WBPS19.genomic)		 scf7180006951744: 4739-4810 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAAGGAGCAAUGCAUUUACUCUAUUAUAUAUUGUGACCGUUUUAAUAGGCCACACAAGAUUUGAAUGAACAACUUCAAUGGCCUUUUAUCACGGUAACAAUGUUAUCCAGGGUCGCGCAGCAUACACAAAGA
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Structure
        10          20        30        40        50        60     
GAAGGAGCAAUGCAUUU--|    AUUAU       G     UU   U      CACAAGAUUUGA 
                   ACUCU     AUAUUGU ACCGU  UAA AGGCCA            A
                   UGGGA     UGUAACA UGGCA  AUU UCCGGU            U
AGAAACACAUACGACGCGC^    CCUAU       A     CU   U      AACUUCAACAAG 
130       120       110       100        90        80        70
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Gs
Mature sequence

Gsa-Mir-2001_5p
mirBase accessionMIMAT0035280
Sequence 
0- UUGUGACCGUUUUAAUAGGCCA -22
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Star sequence

Gsa-Mir-2001_3p*
mirBase accessionMIMAT0035281
Sequence 
50- GCCUUUUAUCACGGUAACAAUG -72
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