MirGeneDB 3.0
MirGeneDB ID

Lpo-Mir-2001

Family name MIR-2001 (all species)
Seed UGUGACC
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues
Orthologues Agr-Mir-2001  Bge-Mir-2001-P1  Bge-Mir-2001-P2  Cbr-Mir-2001  Cel-Mir-2001  Csc-Mir-2001  Cte-Mir-2001-v1  Cte-Mir-2001-v2  Dan-Mir-2001  Dgr-Mir-2001  Dlo-Mir-2001-v1  Dlo-Mir-2001-v2  Dme-Mir-2001  Dmo-Mir-2001  Dsi-Mir-2001  Dya-Mir-2001  Eba-Mir-2001  Gpa-Mir-2001  Gsa-Mir-2001  Hme-Mir-2001  Hmi-Mir-2001  Hru-Mir-2001  Isc-Mir-2001  Lan-Mir-2001-P3  Lan-Mir-2001-P4  Lgi-Mir-2001  Lhy-Mir-2001  Llo-Mir-2001  Mgi-Mir-2001  Mom-Mir-2001  Npo-Mir-2001  Ofu-Mir-2001  Pau-Mir-2001  Pcr-Mir-2001  Pdu-Mir-2001  Pfl-Mir-2001  Pmi-Mir-2001  Pve-Mir-2001  Rph-Mir-2001  Sko-Mir-2001  Snu-Mir-2001  Spu-Mir-2001  Sro-Mir-2001  Tur-Mir-2001  War-Mir-2001  Xbo-Mir-2001 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)		 NW_013667319.1: 181922-181978 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AGCUUGAGUUAAAGUUGAAAUGUCACCAUCUUGUGACCGUUAUAAUGGGCAUGAAACACAACAAUGCUCGUUUUAACGUUCACAGGGUGGACAUUUUCAUGAUUCUACCAAAAAAAG
Get precursor sequence
Structure
        10            20        30        40        50        
AGCUUGAGUUAAAGUUG----|     CA           C     U         GAAAC 
                     AAAUGU  CCAUCUUGUGA CGUUA AAUGGGCAU     \
                     UUUACA  GGUGGGACACU GCAAU UUGCUCGUA     A
GAAAAAAACCAUCUUAGUACU^     --           U     U         ACAAC 
     110       100          90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ge Ge So So So To
Mature sequence

Lpo-Mir-2001_5p
mirBase accessionNone
Sequence 
0- UUGUGACCGUUAUAAUGGGCAU -22
Get sequence
Co-mature sequence

Lpo-Mir-2001_3p
mirBase accessionNone
Sequence 
35- GCUCGUUUUAACGUUCACAGGG -57
Get sequence