Mir-2001

MirGeneDB ID

Lgi-Mir-2001

Family name

MIR-2001 (all species)

Seed

UGUGACC

Species

Owl limpet (Lottia gigantea)

MiRBase ID

lgi-mir-2001

Paralogues

Orthologues

Bge-Mir-2001-P1 Bge-Mir-2001-P2 Cbr-Mir-2001 Cel-Mir-2001 Cgi-Mir-2001 Csc-Mir-2001 Cte-Mir-2001 Dan-Mir-2001 Dme-Mir-2001 Dmo-Mir-2001 Dsi-Mir-2001 Dya-Mir-2001 Hme-Mir-2001 Isc-Mir-2001 Lan-Mir-2001-P3 Lan-Mir-2001-P4 Lpo-Mir-2001 Npo-Mir-2001 Pfl-Mir-2001 Pmi-Mir-2001 Sko-Mir-2001 Spu-Mir-2001 Xbo-Mir-2001

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(Lotgi1)

LOTGIsca_150: 486301-486357 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-2001)

Mir-252-P2 LOTGIsca_150: 483957-484016 [-] Ensembl
Mir-252-P1 LOTGIsca_150: 486133-486191 [-] Ensembl
Mir-2001 LOTGIsca_150: 486301-486357 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

AACGAGACAAAAGUAGAUGUACCGUGACCUUUGUGACCGUUAUAAUGGGCAUUUAGAAUUGAAGUGCUCCUUAUUACGAUCAGAAGGGUCUCGUUCCUUUAUAUCAUCAUCAGAAGU

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Structure

        10        20          30        40        50        
AACGAGACAAAAGUAGAUGUAC--| U       G   C   U    U       UAGA 
                        CG GACCUUU UGA CGU AUAA GGGCAUU    \
                        GC CUGGGAA ACU GCA UAUU CUCGUGA    A
UGAAGACUACUACUAUAUUUCCUU^ U       G   A   U    C       AGUU 
     110       100        90        80        70        60

Deep sequencing

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3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Lgi-Mir-2001_5p

mirBase accession

MIMAT0009731

Sequence

0- UUGUGACCGUUAUAAUGGGCAUU -23

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Star sequence

Lgi-Mir-2001_3p* (predicted)

mirBase accession

None

Sequence

34- UGCUCCUUAUUACGAUCAGAAGG -57

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