MirGeneDB 3.0
MirGeneDB ID

Npo-Mir-2001

Family name MIR-2001 (all species)
Seed UGUGACC
Species Chambered Nautilus (Nautilus pompilius)
MiRBase ID
Paralogues
Orthologues Agr-Mir-2001  Bge-Mir-2001-P1  Bge-Mir-2001-P2  Cbr-Mir-2001  Cel-Mir-2001  Csc-Mir-2001  Cte-Mir-2001-v1  Cte-Mir-2001-v2  Dan-Mir-2001  Dgr-Mir-2001  Dlo-Mir-2001-v1  Dlo-Mir-2001-v2  Dme-Mir-2001  Dmo-Mir-2001  Dsi-Mir-2001  Dya-Mir-2001  Eba-Mir-2001  Gpa-Mir-2001  Gsa-Mir-2001  Hme-Mir-2001  Hmi-Mir-2001  Hru-Mir-2001  Isc-Mir-2001  Lan-Mir-2001-P3  Lan-Mir-2001-P4  Lgi-Mir-2001  Lhy-Mir-2001  Llo-Mir-2001  Lpo-Mir-2001  Mgi-Mir-2001  Mom-Mir-2001  Ofu-Mir-2001  Pau-Mir-2001  Pcr-Mir-2001  Pdu-Mir-2001  Pfl-Mir-2001  Pmi-Mir-2001  Pve-Mir-2001  Rph-Mir-2001  Sko-Mir-2001  Snu-Mir-2001  Spu-Mir-2001  Sro-Mir-2001  Tur-Mir-2001  War-Mir-2001  Xbo-Mir-2001 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(GCA_018389105_NPO)		 JACATO010000601.1: 22889-22948 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AGAAAAUAGAACUGUACGCACCUCUGGUCGUUGUGACCGUUACGAUGGGCAUUUGUCUUAAGUAUAAUGCUCCUUGUAACGAUCAUAGCUACCAGGUGGCGCUCUUUCUUCCAUGGCAGG
Get precursor sequence
Structure
        10         20         30        40        50         
AGAAAAUAGAACUGUAC-  A  -|     C       C        U       UGUCU 
                  GC CC UCUGGU GUUGUGA CGUUACGA GGGCAUU     U
                  CG GG GGACCA CGAUACU GCAAUGUU CUCGUAA     A
GGACGGUACCUUCUUUCU  C  U^     U       A        C       UAUGA 
.       110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Mature sequence

Npo-Mir-2001_5p (predicted)
mirBase accessionNone
Sequence 
0- UUGUGACCGUUACGAUGGGCAUU -23
Get sequence
Star sequence

Npo-Mir-2001_3p* (predicted)
mirBase accessionNone
Sequence 
37- UGCUCCUUGUAACGAUCAUAGCU -60
Get sequence