Mir-2001

MirGeneDB ID

Hru-Mir-2001

Family name

MIR-2001 (all species)

Seed

UGUGACC

Species

Red Abalone (Haliotis rufescens)

MiRBase ID

Paralogues

Orthologues

Agr-Mir-2001 Bge-Mir-2001-P1 Bge-Mir-2001-P2 Cbr-Mir-2001 Cel-Mir-2001 Csc-Mir-2001 Cte-Mir-2001-v1 Cte-Mir-2001-v2 Dan-Mir-2001 Dgr-Mir-2001 Dlo-Mir-2001-v1 Dlo-Mir-2001-v2 Dme-Mir-2001 Dmo-Mir-2001 Dsi-Mir-2001 Dya-Mir-2001 Eba-Mir-2001 Gpa-Mir-2001 Gsa-Mir-2001 Hme-Mir-2001 Hmi-Mir-2001 Isc-Mir-2001 Lan-Mir-2001-P3 Lan-Mir-2001-P4 Lgi-Mir-2001 Lhy-Mir-2001 Llo-Mir-2001 Lpo-Mir-2001 Mgi-Mir-2001 Mom-Mir-2001 Npo-Mir-2001 Ofu-Mir-2001 Pau-Mir-2001 Pcr-Mir-2001 Pdu-Mir-2001 Pfl-Mir-2001 Pmi-Mir-2001 Pve-Mir-2001 Rph-Mir-2001 Sko-Mir-2001 Snu-Mir-2001 Spu-Mir-2001 Sro-Mir-2001 Tur-Mir-2001 War-Mir-2001 Xbo-Mir-2001

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(GCA_023055435.1_xgHalRufe1.0.p_genomic_plus_traces)

JALGQA010000012.1: 1918026-1918084 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCUGUUGUUGUGAUGUGGUUGCUUGCGGUGUUGUGACCGUUAUAAUGGGCAUUUGUAUCCUAUAGUGCUCCUUGUGACGUCCACACUGCCGCGACAUCCGCUACUUCACCCACACUACC

Get precursor sequence

Structure

        10               20        30        40        50        
CCUGUUGUUGUGAUGUG-------|    UU       U U   C       U       UGUA 
                        GUUGC  GCGGUGU G GAC GUUAUAA GGGCAUU    U
                        CAGCG  CGUCACA C CUG CAGUGUU CUCGUGA    C
CCAUCACACCCACUUCAUCGCCUA^    C-       - -   -       C       UAUC 
       110       100        90           80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

To	To

Mature sequence

Hru-Mir-2001_5p

mirBase accession

None

Sequence

0- UUGUGACCGUUAUAAUGGGCAUU -23

Get sequence

Star sequence

Hru-Mir-2001_3p* (predicted)

mirBase accession

None

Sequence

35- UGCUCCUUGUGACGUCCACACUGC -59

Get sequence