MirGeneDB 3.0
MirGeneDB ID

Hme-Mir-2001

Family name MIR-2001 (all species)
Seed UUGUGAC
Species Longwing butterfly (Heliconius melpomene)
MiRBase ID
Paralogues
Orthologues Agr-Mir-2001  Bge-Mir-2001-P1  Bge-Mir-2001-P2  Cbr-Mir-2001  Cel-Mir-2001  Csc-Mir-2001  Cte-Mir-2001-v1  Cte-Mir-2001-v2  Dan-Mir-2001  Dgr-Mir-2001  Dlo-Mir-2001-v1  Dlo-Mir-2001-v2  Dme-Mir-2001  Dmo-Mir-2001  Dsi-Mir-2001  Dya-Mir-2001  Eba-Mir-2001  Gpa-Mir-2001  Gsa-Mir-2001  Hmi-Mir-2001  Hru-Mir-2001  Isc-Mir-2001  Lan-Mir-2001-P3  Lan-Mir-2001-P4  Lgi-Mir-2001  Lhy-Mir-2001  Llo-Mir-2001  Lpo-Mir-2001  Mgi-Mir-2001  Mom-Mir-2001  Npo-Mir-2001  Ofu-Mir-2001  Pau-Mir-2001  Pcr-Mir-2001  Pdu-Mir-2001  Pfl-Mir-2001  Pmi-Mir-2001  Pve-Mir-2001  Rph-Mir-2001  Sko-Mir-2001  Snu-Mir-2001  Spu-Mir-2001  Sro-Mir-2001  Tur-Mir-2001  War-Mir-2001  Xbo-Mir-2001 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Hmel_1)		 HE669201: 27587-27644 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-2001)		 Mir-252-P2 HE669201: 11729-11788 [-] Ensembl
Mir-252-P1 HE669201: 24262-24317 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AAACAAAGAAGAAUUUGUUAGCGAAGUUGGUUUGUGACCGUCACUAACGGGCAGUUGUGUGUUUGCUCGUUUUGACGAUCGCAAAAUGAACUCGCUUGACGUUAAUACAUCAUUUUUG
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Structure
        10           20        30         40        50        
AAACAAAGAAGAAUUUGUU---|    A   G    -    C     CU        GUUG 
                      AGCGA GUU GUUU GUGA CGUCA  AACGGGCA    U
                      UCGCU CAA UAAA CGCU GCAGU  UUGCUCGU    G
GUUUUUACUACAUAAUUGCAGU^    -   G    A    A     U-        UUGU 
      110       100         90        80         70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Ad Fe Fe Fe Fe Ma Ma
Mature sequence

Hme-Mir-2001_5p
mirBase accessionNone
Sequence 
0- UUUGUGACCGUCACUAACGGGCA -23
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Star sequence

Hme-Mir-2001_3p*
mirBase accessionNone
Sequence 
35- CUCGUUUUGACGAUCGCAAAAUG -58
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