MirGeneDB ID | Ofu-Mir-2001 |
Family name |
MIR-2001 (all species) |
Seed |
UGUGACC |
Species |
Tubeworm (Owenia fusiformis) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Agr-Mir-2001
Bge-Mir-2001-P1
Bge-Mir-2001-P2
Cbr-Mir-2001
Cel-Mir-2001
Csc-Mir-2001
Cte-Mir-2001-v1
Cte-Mir-2001-v2
Dan-Mir-2001
Dgr-Mir-2001
Dlo-Mir-2001-v1
Dlo-Mir-2001-v2
Dme-Mir-2001
Dmo-Mir-2001
Dsi-Mir-2001
Dya-Mir-2001
Eba-Mir-2001
Gpa-Mir-2001
Gsa-Mir-2001
Hme-Mir-2001
Hmi-Mir-2001
Hru-Mir-2001
Isc-Mir-2001
Lan-Mir-2001-P3
Lan-Mir-2001-P4
Lgi-Mir-2001
Lhy-Mir-2001
Llo-Mir-2001
Lpo-Mir-2001
Mgi-Mir-2001
Mom-Mir-2001
Npo-Mir-2001
Pau-Mir-2001
Pcr-Mir-2001
Pdu-Mir-2001
Pfl-Mir-2001
Pmi-Mir-2001
Pve-Mir-2001
Rph-Mir-2001
Sko-Mir-2001
Snu-Mir-2001
Spu-Mir-2001
Sro-Mir-2001
Tur-Mir-2001
War-Mir-2001
Xbo-Mir-2001
|
Node of Origin (locus) |
Bilateria
|
Node of Origin (family) |
Bilateria
|
Genome context (GCA_903813345.2_Owenia) |
CAIIXF020000005.1: 14833615-14833672 [-]
|
Precursor (pre-Mir +30nt flank) |
AAUGCACUACUAAGAAUGUAUUUCAUAAGAUUGUGACCGUUAUAAUGGGCAUUCCAUGAAAAUAAAUGCUCUUCUAACAGUCAUAGUUUUAGGAAAUCACCAAUUAUCAGCACACACU
Get precursor sequence
|
Structure | 10 20 30 40 50
AAUGCACUACUAAGAAU- -| A C U U CCAUG
GU AUUUC UAAGAUUGUGAC GUUA AA GGGCAUU \
CA UAAAG AUUUUGAUACUG CAAU UU CUCGUAA A
UCACACACGACUAUUAAC C^ G A C - AUAAA
110 100 90 80 70 60 |
Deep sequencing |
|
3' NTU |
No
|
Motifs | UG at 5p(-14) |
Tissue expression
|
|
Mature sequence |
Ofu-Mir-2001_5p |
mirBase accession | None |
Sequence |
0- UUGUGACCGUUAUAAUGGGCAUU -23
Get sequence
|
Star sequence |
Ofu-Mir-2001_3p* |
mirBase accession | None |
Sequence |
36- UGCUCUUCUAACAGUCAUAGUU -58
Get sequence
|