MirGeneDB 3.0
MirGeneDB ID

Cbr-Mir-2001

Family name MIR-2001 (all species)
Seed UGUGACC
Species Roundworm (Caenorhabditis briggsae)
MiRBase ID cbr-mir-360
Paralogues
Orthologues Agr-Mir-2001  Bge-Mir-2001-P1  Bge-Mir-2001-P2  Cel-Mir-2001  Csc-Mir-2001  Cte-Mir-2001-v1  Cte-Mir-2001-v2  Dan-Mir-2001  Dgr-Mir-2001  Dlo-Mir-2001-v1  Dlo-Mir-2001-v2  Dme-Mir-2001  Dmo-Mir-2001  Dsi-Mir-2001  Dya-Mir-2001  Eba-Mir-2001  Gpa-Mir-2001  Gsa-Mir-2001  Hme-Mir-2001  Hmi-Mir-2001  Hru-Mir-2001  Isc-Mir-2001  Lan-Mir-2001-P3  Lan-Mir-2001-P4  Lgi-Mir-2001  Lhy-Mir-2001  Llo-Mir-2001  Lpo-Mir-2001  Mgi-Mir-2001  Mom-Mir-2001  Npo-Mir-2001  Ofu-Mir-2001  Pau-Mir-2001  Pcr-Mir-2001  Pdu-Mir-2001  Pfl-Mir-2001  Pmi-Mir-2001  Pve-Mir-2001  Rph-Mir-2001  Sko-Mir-2001  Snu-Mir-2001  Spu-Mir-2001  Sro-Mir-2001  Tur-Mir-2001  War-Mir-2001  Xbo-Mir-2001 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(CB4)		 X: 11259477-11259537 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UGAAUAUUCCAUAAAAAAGCGCCUAGGGUUUUGUGACCGUUGUUACGGUCAAUUCAUGUCUGACACAAUGACCGUAAUCCCGUUCACAACACCUUGUGUGGCUUGAAUAAUGAAAUUGUAU
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Structure
        10        20           30        40        50          
UGAAUAUUCCAUAAAAAAGC   ---|     U      C  UU          AUUCAUGU 
                    GCC   UAGGGU UUGUGA CG  GUUACGGUCA        \
                    CGG   GUUCCA AACACU GC  UAAUGCCAGU        C
UAUGUUAAAGUAAUAAGUU-   UGU^     C      U  CC          AACACAGU 
 .       110        100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Ea Ma Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Yo Yo
Mature sequence

Cbr-Mir-2001_5p
mirBase accessionNone
Sequence 
0- UUGUGACCGUUGUUACGGUCA -21
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Star sequence

Cbr-Mir-2001_3p*
mirBase accessionMIMAT0001303
Sequence 
40- ACCGUAAUCCCGUUCACAACA -61
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