MirGeneDB 3.0
MirGeneDB ID

Eba-Mir-2001

Family name MIR-2001 (all species)
Seed UGUGACC
Species Epimenia (Solenogaster) (Epimenia babai)
MiRBase ID
Paralogues
Orthologues Agr-Mir-2001  Bge-Mir-2001-P1  Bge-Mir-2001-P2  Cbr-Mir-2001  Cel-Mir-2001  Csc-Mir-2001  Cte-Mir-2001-v1  Cte-Mir-2001-v2  Dan-Mir-2001  Dgr-Mir-2001  Dlo-Mir-2001-v1  Dlo-Mir-2001-v2  Dme-Mir-2001  Dmo-Mir-2001  Dsi-Mir-2001  Dya-Mir-2001  Gpa-Mir-2001  Gsa-Mir-2001  Hme-Mir-2001  Hmi-Mir-2001  Hru-Mir-2001  Isc-Mir-2001  Lan-Mir-2001-P3  Lan-Mir-2001-P4  Lgi-Mir-2001  Lhy-Mir-2001  Llo-Mir-2001  Lpo-Mir-2001  Mgi-Mir-2001  Mom-Mir-2001  Npo-Mir-2001  Ofu-Mir-2001  Pau-Mir-2001  Pcr-Mir-2001  Pdu-Mir-2001  Pfl-Mir-2001  Pmi-Mir-2001  Pve-Mir-2001  Rph-Mir-2001  Sko-Mir-2001  Snu-Mir-2001  Spu-Mir-2001  Sro-Mir-2001  Tur-Mir-2001  War-Mir-2001  Xbo-Mir-2001 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(GCA_011762755.2_ASM1176275v2_Epimenia)		 WURV02156569.1: 3460-3519 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CAACCGACCGACCGAAGAACAGUGGUGGGUUUGUGACCGAUAUAAUGGGCAUGUCAACAUUAAAUCAUGCUCUUUAUCUCGAUCAUAUGUCUACAUCUGUAUGUAGCAACACUCAAGUCU
Get precursor sequence
Structure
        10          20        30        40        50         
CAACCGACCGACCGAAGA--|   UG     UU     C   U    U    AUGUCAAC 
                    ACAG  GUGGG  UGUGA CGA AUAA GGGC        A
                    UGUC  CAUCU  AUACU GCU UAUU CUCG        U
UCUGAACUCACAACGAUGUA^   UA     GU     A   C    U    UACUAAAU 
.       110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Eba-Mir-2001_5p
mirBase accessionNone
Sequence 
0- UUGUGACCGAUAUAAUGGGC -20
Get sequence
Star sequence

Eba-Mir-2001_3p* (predicted)
mirBase accessionNone
Sequence 
40- UCUUUAUCUCGAUCAUAUGU -60
Get sequence