MirGeneDB 3.0
MirGeneDB ID

Hmi-Mir-2001

Family name MIR-2001 (all species)
Seed UGUGACC
Species Panther worm (Hofstenia miamia)
MiRBase ID
Paralogues
Orthologues Agr-Mir-2001  Bge-Mir-2001-P1  Bge-Mir-2001-P2  Cbr-Mir-2001  Cel-Mir-2001  Csc-Mir-2001  Cte-Mir-2001-v1  Cte-Mir-2001-v2  Dan-Mir-2001  Dgr-Mir-2001  Dlo-Mir-2001-v1  Dlo-Mir-2001-v2  Dme-Mir-2001  Dmo-Mir-2001  Dsi-Mir-2001  Dya-Mir-2001  Eba-Mir-2001  Gpa-Mir-2001  Gsa-Mir-2001  Hme-Mir-2001  Hru-Mir-2001  Isc-Mir-2001  Lan-Mir-2001-P3  Lan-Mir-2001-P4  Lgi-Mir-2001  Lhy-Mir-2001  Llo-Mir-2001  Lpo-Mir-2001  Mgi-Mir-2001  Mom-Mir-2001  Npo-Mir-2001  Ofu-Mir-2001  Pau-Mir-2001  Pcr-Mir-2001  Pdu-Mir-2001  Pfl-Mir-2001  Pmi-Mir-2001  Pve-Mir-2001  Rph-Mir-2001  Sko-Mir-2001  Snu-Mir-2001  Spu-Mir-2001  Sro-Mir-2001  Tur-Mir-2001  War-Mir-2001  Xbo-Mir-2001 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Hofstenia_miamia.HmiaM1.dna.nonchromosomal)		 SCFE01000006.1: 3184949-3184999 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUUGCUUUGACUUCGCAGUACCGGUUCGUAUUGUGACCGUUACAACGGGUGUUGACAACAUCUUUUGCAACGGUCACCAAUAAAUUUCACUGACUAAUCAGGUUAGUAUGU
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Structure
        10        20           30         40        50     
CUUGCUUUGACUUCGCAGUAC    UCG---    -|        A   C      UG 
                     CGGU      UAUU GUGACCGUU CAA GGGUGU  \
                     GUCA      AUAA CACUGGCAA GUU UCUACA  A
UGUAUGAUUGGACUAAUCA--    CUUUAA    C^        C   U      AC 
 .       100          90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsNo
Tissue expression
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Mature sequence

Hmi-Mir-2001_5p
mirBase accessionNone
Sequence 
0- UUGUGACCGUUACAACGGGUGU -22
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Star sequence

Hmi-Mir-2001_3p* (predicted)
mirBase accessionNone
Sequence 
29- AUCUUUUGCAACGGUCACCAAU -51
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