MirGeneDB ID | Isc-Mir-2001 |
Family name |
MIR-2001 (all species) |
Seed |
UGUGACC |
Species |
Deer tick (Ixodes scapularis) |
MiRBase ID |
isc-mir-2001
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Paralogues |
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Orthologues |
Agr-Mir-2001
Bge-Mir-2001-P1
Bge-Mir-2001-P2
Cbr-Mir-2001
Cel-Mir-2001
Csc-Mir-2001
Cte-Mir-2001-v1
Cte-Mir-2001-v2
Dan-Mir-2001
Dgr-Mir-2001
Dlo-Mir-2001-v1
Dlo-Mir-2001-v2
Dme-Mir-2001
Dmo-Mir-2001
Dsi-Mir-2001
Dya-Mir-2001
Eba-Mir-2001
Gpa-Mir-2001
Gsa-Mir-2001
Hme-Mir-2001
Hmi-Mir-2001
Hru-Mir-2001
Lan-Mir-2001-P3
Lan-Mir-2001-P4
Lgi-Mir-2001
Lhy-Mir-2001
Llo-Mir-2001
Lpo-Mir-2001
Mgi-Mir-2001
Mom-Mir-2001
Npo-Mir-2001
Ofu-Mir-2001
Pau-Mir-2001
Pcr-Mir-2001
Pdu-Mir-2001
Pfl-Mir-2001
Pmi-Mir-2001
Pve-Mir-2001
Rph-Mir-2001
Sko-Mir-2001
Snu-Mir-2001
Spu-Mir-2001
Sro-Mir-2001
Tur-Mir-2001
War-Mir-2001
Xbo-Mir-2001
|
Node of Origin (locus) |
Bilateria
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Node of Origin (family) |
Bilateria
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Genome context (GCF_016920785.2_ASM1692078v2_ISC) |
NW_024609884.1: 42500086-42500147 [+]
Ensembl
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Precursor (pre-Mir +30nt flank) |
ACCCCGUGGUGCCGCAGUGUCCUGGCCGCCUUGUGACCGUUACAAUGGGCAUGUUGGUCCACGUGCAGAUGCCCACUGUCACGUUCACUGGGCGGACACGGCGCUCACUCGCCGACCAGGUG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
ACCCCGUGGUGCCGCAGU--| C G U C U A GUUGGUC
GUC UG CCGCCU GUGA CGU ACA UGGGCAU C
CGG AC GGCGGG CACU GCA UGU ACCCGUA A
GUGGACCAGCCGCUCACUCG^ C A U U C C GACGUGC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Dicer cut +1 on the 3p arm. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Sa |
Sa |
To |
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Mature sequence |
Isc-Mir-2001_5p |
mirBase accession | MIMAT0009721 |
Sequence |
0- UUGUGACCGUUACAAUGGGCAU -22
Get sequence
|
Star sequence |
Isc-Mir-2001_3p* |
mirBase accession | None |
Sequence |
40- GCCCACUGUCACGUUCACUGGG -62
Get sequence
|