Mir-2001

MirGeneDB ID

Dan-Mir-2001

Family name

MIR-2001 (all species)

Seed

UUGUGAC

Species

Fruit fly (Drosophila ananassae)

MiRBase ID

dan-mir-274

Paralogues

Orthologues

Agr-Mir-2001 Bge-Mir-2001-P1 Bge-Mir-2001-P2 Cbr-Mir-2001 Cel-Mir-2001 Csc-Mir-2001 Cte-Mir-2001-v1 Cte-Mir-2001-v2 Dgr-Mir-2001 Dlo-Mir-2001-v1 Dlo-Mir-2001-v2 Dme-Mir-2001 Dmo-Mir-2001 Dsi-Mir-2001 Dya-Mir-2001 Eba-Mir-2001 Gpa-Mir-2001 Gsa-Mir-2001 Hme-Mir-2001 Hmi-Mir-2001 Hru-Mir-2001 Isc-Mir-2001 Lan-Mir-2001-P3 Lan-Mir-2001-P4 Lgi-Mir-2001 Lhy-Mir-2001 Llo-Mir-2001 Lpo-Mir-2001 Mgi-Mir-2001 Mom-Mir-2001 Npo-Mir-2001 Ofu-Mir-2001 Pau-Mir-2001 Pcr-Mir-2001 Pdu-Mir-2001 Pfl-Mir-2001 Pmi-Mir-2001 Pve-Mir-2001 Rph-Mir-2001 Sko-Mir-2001 Snu-Mir-2001 Spu-Mir-2001 Sro-Mir-2001 Tur-Mir-2001 War-Mir-2001 Xbo-Mir-2001

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(Dana_caf1)

scaffold_13337: 5918636-5918702 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

UUUUAAAAAACAGAAAUGUUGCAGUUUCGUUUUGUGACCGACACUAACGGGUAUUUUACAGGACAUACAGGAUUACUCGUUUUUGCGAUCACAAAUCCUGAAAUUGCAGCAAAAAACAGCAAAGAAA

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Structure

        10        20        30          40        50        60   
UUUUAAAAAACAGAAAUG           U--|      C  A  CU        UUUUACAGG 
                  UUGCAGUUUCG   UUUGUGA CG CA  AACGGGUA         A
                  GACGUUAAAGU   AAACACU GC GU  UUGCUCAU         C
AAAGAAACGACAAAAAAC           CCU^      A  -  UU        UAGGACAUA 
     120       110       100        90         80        70

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Fe

Mature sequence

Dan-Mir-2001_5p

mirBase accession

MIMAT0008448

Sequence

0- UUUGUGACCGACACUAACGGGUA -23

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Star sequence

Dan-Mir-2001_3p*

mirBase accession

None

Sequence

45- CUCGUUUUUGCGAUCACAAAUC -67

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