MirGeneDB 3.0

MirGeneDB ID

Cel-Mir-2001

Family name MIR-2001 (all species)
Seed UGUGACC
Species Roundworm (Caenorhabditis elegans)
MiRBase ID cel-mir-360
Paralogues
Orthologues Agr-Mir-2001  Bge-Mir-2001-P1  Bge-Mir-2001-P2  Cbr-Mir-2001  Csc-Mir-2001  Cte-Mir-2001-v1  Cte-Mir-2001-v2  Dan-Mir-2001  Dgr-Mir-2001  Dlo-Mir-2001-v1  Dlo-Mir-2001-v2  Dme-Mir-2001  Dmo-Mir-2001  Dsi-Mir-2001  Dya-Mir-2001  Eba-Mir-2001  Gpa-Mir-2001  Gsa-Mir-2001  Hme-Mir-2001  Hmi-Mir-2001  Hru-Mir-2001  Isc-Mir-2001  Lan-Mir-2001-P3  Lan-Mir-2001-P4  Lgi-Mir-2001  Lhy-Mir-2001  Llo-Mir-2001  Lpo-Mir-2001  Mgi-Mir-2001  Mom-Mir-2001  Npo-Mir-2001  Ofu-Mir-2001  Pau-Mir-2001  Pcr-Mir-2001  Pdu-Mir-2001  Pfl-Mir-2001  Pmi-Mir-2001  Pve-Mir-2001  Rph-Mir-2001  Sko-Mir-2001  Snu-Mir-2001  Spu-Mir-2001  Sro-Mir-2001  Tur-Mir-2001  War-Mir-2001  Xbo-Mir-2001 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(ce11)
chrX: 5919174-5919235 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUCGGCAUUCUGUUAGGAAGCAUCAAUGUGUUGUGACCGUUGUUACGGUCAAUUUGCAAAUUGAAAAAAUGACCGUAAUCCCGUUCACAAUACAUUGUUCGUUUUCUCCAAAGGUGAUUCAU
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Structure
        10         20         30        40        50        60
UUCGGCAUUCUGUUAGG-    AU-|            C  UU          AUUUGCAA 
                  AAGC   CAAUGUGUUGUGA CG  GUUACGGUCA        A
                  UUUG   GUUACAUAACACU GC  UAAUGCCAGU        U
UACUUAGUGGAAACCUCU    CUU^            U  CC          AAAAAAGU 
120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Da Ea Mi Wi Yo Yo
Mature sequence

Cel-Mir-2001_5p

mirBase accessionMIMAT0015121
Sequence
0- UUGUGACCGUUGUUACGGUCA -21
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Proposed targets microrna.org: MIMAT0015121
Star sequence

Cel-Mir-2001_3p*

mirBase accessionMIMAT0000702
Sequence
41- ACCGUAAUCCCGUUCACAAUA -62
Get sequence
Proposed targets microrna.org: MIMAT0000702
TargetScanWorm: cel-miR-360