Mir-2001

MirGeneDB ID

Dme-Mir-2001

Family name

MIR-2001 (all species)

Seed

UUGUGAC

Species

Fruit fly (Drosophila melanogaster)

MiRBase ID

dme-mir-274

Paralogues

Orthologues

Agr-Mir-2001 Bge-Mir-2001-P1 Bge-Mir-2001-P2 Cbr-Mir-2001 Cel-Mir-2001 Csc-Mir-2001 Cte-Mir-2001-v1 Cte-Mir-2001-v2 Dan-Mir-2001 Dgr-Mir-2001 Dlo-Mir-2001-v1 Dlo-Mir-2001-v2 Dmo-Mir-2001 Dsi-Mir-2001 Dya-Mir-2001 Eba-Mir-2001 Gpa-Mir-2001 Gsa-Mir-2001 Hme-Mir-2001 Hmi-Mir-2001 Hru-Mir-2001 Isc-Mir-2001 Lan-Mir-2001-P3 Lan-Mir-2001-P4 Lgi-Mir-2001 Lhy-Mir-2001 Llo-Mir-2001 Lpo-Mir-2001 Mgi-Mir-2001 Mom-Mir-2001 Npo-Mir-2001 Ofu-Mir-2001 Pau-Mir-2001 Pcr-Mir-2001 Pdu-Mir-2001 Pfl-Mir-2001 Pmi-Mir-2001 Pve-Mir-2001 Rph-Mir-2001 Sko-Mir-2001 Snu-Mir-2001 Spu-Mir-2001 Sro-Mir-2001 Tur-Mir-2001 War-Mir-2001 Xbo-Mir-2001

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(Drosophila_melanogaster_BDGP6)

3L: 11656937-11657002 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUGGUGACGAAUCCUGUGUUGCAGUUUCGUUUUGUGACCGACACUAACGGGUAAUUGUUUGGCCGCCAGGAUUACUCGUUUUUGCGAUCACAAAUUAUGAAAUUGCAGCAAAACUCAACGAAAUUG

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Structure

        10        20        30          40        50        60   
UUGGUGACGAAUCCUGUG            --|      C  A  CU       AAUUGUUUGG 
                  UUGCAGUUUCGU  UUUGUGA CG CA  AACGGGU          \
                  GACGUUAAAGUA  AAACACU GC GU  UUGCUCA          C
GUUAAAGCAACUCAAAAC            UU^      A  -  UU       UUAGGACCGC 
    120       110       100        90         80        70

Deep sequencing

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Comment

There is a second Dicer cut +1 on both arms.

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Bo	He	He	La	Ov	Sa	Wh

Mature sequence

Dme-Mir-2001_5p

mirBase accession

MIMAT0000332

Sequence

0- UUUGUGACCGACACUAACGGGU -22

Get sequence

Proposed targets

microrna.org: MIMAT0000332
TargetScanFly: dme-miR-274

Star sequence

Dme-Mir-2001_3p*

mirBase accession

MIMAT0020800

Sequence

45- UCGUUUUUGCGAUCACAAAUU -66

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