MirGeneDB 3.0
MirGeneDB ID

Tur-Mir-2001

Family name MIR-2001 (all species)
Seed UGUGACC
Species Two-spotted spider mite (Tetranychus urticae)
MiRBase ID
Paralogues
Orthologues Agr-Mir-2001  Bge-Mir-2001-P1  Bge-Mir-2001-P2  Cbr-Mir-2001  Cel-Mir-2001  Csc-Mir-2001  Cte-Mir-2001-v1  Cte-Mir-2001-v2  Dan-Mir-2001  Dgr-Mir-2001  Dlo-Mir-2001-v1  Dlo-Mir-2001-v2  Dme-Mir-2001  Dmo-Mir-2001  Dsi-Mir-2001  Dya-Mir-2001  Eba-Mir-2001  Gpa-Mir-2001  Gsa-Mir-2001  Hme-Mir-2001  Hmi-Mir-2001  Hru-Mir-2001  Isc-Mir-2001  Lan-Mir-2001-P3  Lan-Mir-2001-P4  Lgi-Mir-2001  Lhy-Mir-2001  Llo-Mir-2001  Lpo-Mir-2001  Mgi-Mir-2001  Mom-Mir-2001  Npo-Mir-2001  Ofu-Mir-2001  Pau-Mir-2001  Pcr-Mir-2001  Pdu-Mir-2001  Pfl-Mir-2001  Pmi-Mir-2001  Pve-Mir-2001  Rph-Mir-2001  Sko-Mir-2001  Snu-Mir-2001  Spu-Mir-2001  Sro-Mir-2001  War-Mir-2001  Xbo-Mir-2001 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(GCA_000239435.1_ASM23943v1_genomic_TUR_traces)		 HE587309.1: 1324887-1324960 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AAUCACCCGCUCAACUGGCCUGACUCCUUGUUGUGACCGCUCACAAUGGGCGUGCGAACGCUAAUCAGACGGCAUUAUUAGCGCCCGUUUGGACGACCACAAAAAGGAGCCAAGCGCUUGUUCACCAAAUUAUU
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Structure
        10          20        30        40        50        60       
AAUCACCCGCUCAACUG--| C  A      G     AC  CU  C       GUGCGAACGCUAAUC 
                   GC UG CUCCUU UUGUG  CG  CA AAUGGGC               \
                   CG AC GAGGAA AACAC  GC  GU UUGCCCG               A
UUAUUAAACCACUUGUUCG^ A  C      A     CA  AG  -       CGAUUAUUACGGCAG 
  130       120       110       100        90         80        70
Deep sequencing
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CommentThere is a second Dicer cut +1 on both arms.
3' NTU No
MotifsUGUG in loop
Tissue expression
-   +
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Mature sequence

Tur-Mir-2001_5p
mirBase accessionNone
Sequence 
0- UUGUGACCGCUCACAAUGGGC -21
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Star sequence

Tur-Mir-2001_3p*
mirBase accessionNone
Sequence 
53- CCCGUUUGGACGACCACAAAA -74
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