MirGeneDB 3.0
MirGeneDB ID

Pdu-Mir-2001

Family name MIR-2001 (all species)
Seed UGUGACC
Species Dumerils clam worm (Platynereis dumerilii)
MiRBase ID
Paralogues
Orthologues Agr-Mir-2001  Bge-Mir-2001-P1  Bge-Mir-2001-P2  Cbr-Mir-2001  Cel-Mir-2001  Csc-Mir-2001  Cte-Mir-2001-v1  Cte-Mir-2001-v2  Dan-Mir-2001  Dgr-Mir-2001  Dlo-Mir-2001-v1  Dlo-Mir-2001-v2  Dme-Mir-2001  Dmo-Mir-2001  Dsi-Mir-2001  Dya-Mir-2001  Eba-Mir-2001  Gpa-Mir-2001  Gsa-Mir-2001  Hme-Mir-2001  Hmi-Mir-2001  Hru-Mir-2001  Isc-Mir-2001  Lan-Mir-2001-P3  Lan-Mir-2001-P4  Lgi-Mir-2001  Lhy-Mir-2001  Llo-Mir-2001  Lpo-Mir-2001  Mgi-Mir-2001  Mom-Mir-2001  Npo-Mir-2001  Ofu-Mir-2001  Pau-Mir-2001  Pcr-Mir-2001  Pfl-Mir-2001  Pmi-Mir-2001  Pve-Mir-2001  Rph-Mir-2001  Sko-Mir-2001  Snu-Mir-2001  Spu-Mir-2001  Sro-Mir-2001  Tur-Mir-2001  War-Mir-2001  Xbo-Mir-2001 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(GCA_026936325.1_EMBL_pdum_1.0)		 JAPTHN010000005.1: 66483700-66483753 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AUGCAUGUUACUAUUAAGCCUCUCUAUGAUUUGUGACCGUUACAAUGGGCAUGUGUGUAACUGCUCAUUGUUACGUUGACAACUUUUAGAUGGGCACUGUCUGCGCAUGUGCAA
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Structure
        10          20        30        40        50      
AUGCAUGUUACUAUUAA--|   C    U  U    GAC   U          UGUG 
                   GCCU UCUA GA UUGU   CGU ACAAUGGGCA    U
                   CGGG AGAU UU AACA   GCA UGUUACUCGU    G
AACGUGUACGCGUCUGUCA^   U    U  C    GUU   U          CAAU 
  110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
24 24 24 24 24 36 36 36 36 36 48 48 48 48 48 6d 6d 6d 6d 72 72 72 72 72
Mature sequence

Pdu-Mir-2001_5p
mirBase accessionNone
Sequence 
0- UUGUGACCGUUACAAUGGGCA -21
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Star sequence

Pdu-Mir-2001_3p*
mirBase accessionNone
Sequence 
33- CUCAUUGUUACGUUGACAACU -54
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