MirGeneDB 3.0
MirGeneDB ID

Gpa-Mir-2001

Family name MIR-2001 (all species)
Seed UUGUGAC
Species Tsetse fly (Glossina pallidipes)
MiRBase ID
Paralogues
Orthologues Agr-Mir-2001  Bge-Mir-2001-P1  Bge-Mir-2001-P2  Cbr-Mir-2001  Cel-Mir-2001  Csc-Mir-2001  Cte-Mir-2001-v1  Cte-Mir-2001-v2  Dan-Mir-2001  Dgr-Mir-2001  Dlo-Mir-2001-v1  Dlo-Mir-2001-v2  Dme-Mir-2001  Dmo-Mir-2001  Dsi-Mir-2001  Dya-Mir-2001  Eba-Mir-2001  Gsa-Mir-2001  Hme-Mir-2001  Hmi-Mir-2001  Hru-Mir-2001  Isc-Mir-2001  Lan-Mir-2001-P3  Lan-Mir-2001-P4  Lgi-Mir-2001  Lhy-Mir-2001  Llo-Mir-2001  Lpo-Mir-2001  Mgi-Mir-2001  Mom-Mir-2001  Npo-Mir-2001  Ofu-Mir-2001  Pau-Mir-2001  Pcr-Mir-2001  Pdu-Mir-2001  Pfl-Mir-2001  Pmi-Mir-2001  Pve-Mir-2001  Rph-Mir-2001  Sko-Mir-2001  Snu-Mir-2001  Spu-Mir-2001  Sro-Mir-2001  Tur-Mir-2001  War-Mir-2001  Xbo-Mir-2001 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(GpalI1)		 Scaffold4: 2050284-2050374 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GGAUUGUCAUAGGAAUUGUUACAAUUUUAUUUUGUGACCGACACUAACGGGUAACUGAAAUAUCCUUUUAUGUGUUUGUUUCUUCAUAACAAAGAUUUACUCGUUUCUGCGAUCACAAAUUACAAAAUUGUAAUCGAAAUCAACGCAACAA
Get precursor sequence
Structure
        10        20        30          40        50        60        70     
GGAUUGUCAUAGGAAUUG          AU--|      C  A  CU        ACUGAAAUAUCCUUUUAUGUG 
                  UUACAAUUUU    UUUGUGA CG CA  AACGGGUA                     U
                  AAUGUUAAAA    AAACACU GC GU  UUGCUCAU                     U
AACAACGCAACUAAAGCU          CAUU^      A  -  CU        UUAGAAACAAUACUUCUUUGU 
 .       140       130       120       110        100        90        80
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
To To To To To To To To To To To To To To To To To To To To To
Mature sequence

Gpa-Mir-2001_5p
mirBase accessionNone
Sequence 
0- UUUGUGACCGACACUAACGGGUA -23
Get sequence
Star sequence

Gpa-Mir-2001_3p* (predicted)
mirBase accessionNone
Sequence 
69- CUCGUUUCUGCGAUCACAAAUU -91
Get sequence