MirGeneDB 3.0
MirGeneDB ID

Pau-Mir-2001

Family name MIR-2001 (all species)
Seed UGUGACC
Species Horseshoe worm (Phoronis australis)
MiRBase ID
Paralogues
Orthologues Agr-Mir-2001  Bge-Mir-2001-P1  Bge-Mir-2001-P2  Cbr-Mir-2001  Cel-Mir-2001  Csc-Mir-2001  Cte-Mir-2001-v1  Cte-Mir-2001-v2  Dan-Mir-2001  Dgr-Mir-2001  Dlo-Mir-2001-v1  Dlo-Mir-2001-v2  Dme-Mir-2001  Dmo-Mir-2001  Dsi-Mir-2001  Dya-Mir-2001  Eba-Mir-2001  Gpa-Mir-2001  Gsa-Mir-2001  Hme-Mir-2001  Hmi-Mir-2001  Hru-Mir-2001  Isc-Mir-2001  Lan-Mir-2001-P3  Lan-Mir-2001-P4  Lgi-Mir-2001  Lhy-Mir-2001  Llo-Mir-2001  Lpo-Mir-2001  Mgi-Mir-2001  Mom-Mir-2001  Npo-Mir-2001  Ofu-Mir-2001  Pcr-Mir-2001  Pdu-Mir-2001  Pfl-Mir-2001  Pmi-Mir-2001  Pve-Mir-2001  Rph-Mir-2001  Sko-Mir-2001  Snu-Mir-2001  Spu-Mir-2001  Sro-Mir-2001  Tur-Mir-2001  War-Mir-2001  Xbo-Mir-2001 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Phoronis_australis_GCA_002633005)		 NMRA01000092.1: 873567-873625 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UACUAAGUAUGCCUACACUGACUUACGAUCAUGUGACCGUUGUAAUGGGCACUUCCUUUUAAAAUGUGCUCUCUACAACGUCCACAUGACCGUGAUGUCUGUUCCUCAACCACUCCCGA
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Structure
        10         20         30        40        50         
UACUAAGUAUGCCUACACU-   -|    A       AC       AU     CUUCCUU 
                    GAC UUACG UCAUGUG  CGUUGUA  GGGCA       \
                    CUG AGUGC AGUACAC  GCAACAU  CUCGU       U
AGCCCUCACCAACUCCUUGU   U^    C       CU       CU     GUAAAAU 
       110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Pau-Mir-2001_5p
mirBase accessionNone
Sequence 
0- AUGUGACCGUUGUAAUGGGCA -21
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Star sequence

Pau-Mir-2001_3p* (predicted)
mirBase accessionNone
Sequence 
38- CUCUCUACAACGUCCACAUGA -59
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