MirGeneDB 3.0

MirGeneDB ID

Hme-Mir-252-P2

Family name MIR-252 (all species)
Seed UAAGUAC
Species Longwing butterfly (Heliconius melpomene)
MiRBase ID hme-mir-252
Paralogues Hme-Mir-252-P1 
Orthologues Aae-Mir-252-P2  Aga-Mir-252-P2  Agr-Mir-252-P2  Bfl-Mir-252-P2  Bge-Mir-252-P2-v1  Bge-Mir-252-P2-v2  Bla-Mir-252-P2  Cbr-Mir-252-P2  Cel-Mir-252-P2  Csc-Mir-252-P2k  Csc-Mir-252-P2l-v1  Csc-Mir-252-P2l-v2  Cte-Mir-252-P2  Dan-Mir-252-P2-v1  Dan-Mir-252-P2-v2  Dlo-Mir-252-P2  Dma-Mir-252-P2-v1  Dma-Mir-252-P2-v2  Dme-Mir-252-P2-v1  Dme-Mir-252-P2-v2  Dmo-Mir-252-P2-v1  Dmo-Mir-252-P2-v2  Dpu-Mir-252-P2-v1  Dpu-Mir-252-P2-v2  Dsi-Mir-252-P2-v1  Dsi-Mir-252-P2-v2  Dya-Mir-252-P2-v1  Dya-Mir-252-P2-v2  Eba-Mir-252-P2  Gpa-Mir-252-P2  Hru-Mir-252-P2  Isc-Mir-252-P2-v1  Isc-Mir-252-P2-v2  Lan-Mir-252-P2  Lgi-Mir-252-P2  Llo-Mir-252-P2  Lpo-Mir-252-P2c  Lpo-Mir-252-P2d  Mgi-Mir-252-P2  Mom-Mir-252-P2  Npo-Mir-252-P2  Ofu-Mir-252-P2  Pau-Mir-252-P2  Pcr-Mir-252-P2  Pdu-Mir-252-P2  Pfl-Mir-252-P2  Pmi-Mir-252-P2  Pve-Mir-252-P2  Sko-Mir-252-P2  Snu-Mir-252-P2  Spu-Mir-252-P2  Tca-Mir-252-P2  Tur-Mir-252-P2-v1  Tur-Mir-252-P2-v2  War-Mir-252-P2  Xbo-Mir-252-P2 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Hmel_1)
HE669201: 11729-11788 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-252-P2)
Mir-252-P2 HE669201: 11729-11788 [-] Ensembl
Mir-252-P1 HE669201: 24262-24317 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AAAAAAUAUGAAGAAAACUAAAUCAUGUUCCUAAGUACUAGUGCCGCAGGAGUGACUUUCCGAUAUCUCCUGCUGCUUAAGUGCUUAUCAAUAGAUUUAGUGCUUCUACAGAAUUGAAGU
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Structure
        10           20        30        40        50         
AAAAAAUAUGAAGAAAA---|      A    CC        AGU  C       UGACUU 
                    CUAAAUC UGUU  UAAGUACU   GC GCAGGAG      U
                    GAUUUAG AUAA  AUUCGUGA   CG CGUCCUC      C
UGAAGUUAAGACAUCUUCGU^      -    CU        AUU  U       UAUAGC 
.       110       100         90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ad Fe Fe Fe Fe Ma Ma
Mature sequence

Hme-Mir-252-P2_5p

mirBase accessionMIMAT0024948
Sequence
0- CUAAGUACUAGUGCCGCAGGAG -22
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Star sequence

Hme-Mir-252-P2_3p*

mirBase accessionNone
Sequence
38- CCUGCUGCUUAAGUGCUUAUCA -60
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