MirGeneDB 3.0
MirGeneDB ID

Sko-Mir-252-P2

Family name MIR-252 (all species)
Seed UAAGUAC
Species Saccoglossus (Saccoglossus kowalevskii)
MiRBase ID sko-mir-252a
Paralogues Sko-Mir-252-P1 
Orthologues Aae-Mir-252-P2  Aga-Mir-252-P2  Agr-Mir-252-P2  Bfl-Mir-252-P2  Bge-Mir-252-P2-v1  Bge-Mir-252-P2-v2  Bla-Mir-252-P2  Cbr-Mir-252-P2  Cel-Mir-252-P2  Csc-Mir-252-P2k  Csc-Mir-252-P2l-v1  Csc-Mir-252-P2l-v2  Cte-Mir-252-P2  Dan-Mir-252-P2-v1  Dan-Mir-252-P2-v2  Dlo-Mir-252-P2  Dma-Mir-252-P2-v1  Dma-Mir-252-P2-v2  Dme-Mir-252-P2-v1  Dme-Mir-252-P2-v2  Dmo-Mir-252-P2-v1  Dmo-Mir-252-P2-v2  Dpu-Mir-252-P2-v1  Dpu-Mir-252-P2-v2  Dsi-Mir-252-P2-v1  Dsi-Mir-252-P2-v2  Dya-Mir-252-P2-v1  Dya-Mir-252-P2-v2  Eba-Mir-252-P2  Gpa-Mir-252-P2  Hme-Mir-252-P2  Hru-Mir-252-P2  Isc-Mir-252-P2-v1  Isc-Mir-252-P2-v2  Lan-Mir-252-P2  Lgi-Mir-252-P2  Llo-Mir-252-P2  Lpo-Mir-252-P2c  Lpo-Mir-252-P2d  Mgi-Mir-252-P2  Mom-Mir-252-P2  Npo-Mir-252-P2  Ofu-Mir-252-P2  Pau-Mir-252-P2  Pcr-Mir-252-P2  Pdu-Mir-252-P2  Pfl-Mir-252-P2  Pmi-Mir-252-P2  Pve-Mir-252-P2  Snu-Mir-252-P2  Spu-Mir-252-P2  Tca-Mir-252-P2  Tur-Mir-252-P2-v1  Tur-Mir-252-P2-v2  War-Mir-252-P2  Xbo-Mir-252-P2 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Skow_1.1)		 NW_003126934.1: 13977-14037 [-]
Clustered miRNAs
(< 50kb from Mir-252-P2)		 Mir-252-P2 NW_003126934.1: 13977-14037 [-]
Mir-252-P1 NW_003126934.1: 19612-19671 [-]
Mir-2001 NW_003126934.1: 20664-20731 [-]
Precursor
(pre-Mir +30nt flank)
AAAGAAUAAGCAUGACUGGCUGAUCCAAUACUAAGUACUAGUGCCGCAGGAGUCGUAUAUUUGAGUAACCCUGUCGUACUUGUGCUUAACAUAGGAUGUGCCAAUAUUCAUCUGGAAUGCA
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Structure
        10          20        30        40        50        60
AAAGAAUAAGCAUGACU--|  UG    A  AC       U     C     A  CGUAUA 
                   GGC  AUCC AU  UAAGUAC AGUGC GCAGG GU      U
                   CCG  UAGG UA  AUUCGUG UCAUG UGUCC CA      U
ACGUAAGGUCUACUUAUAA^  UG    A  CA       U     C     -  AUGAGU 
 .       110       100        90        80        70
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Sko-Mir-252-P2_5p
mirBase accessionMIMAT0009638
Sequence 
0- CUAAGUACUAGUGCCGCAGGAGU -23
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Star sequence

Sko-Mir-252-P2_3p* (predicted)
mirBase accessionNone
Sequence 
38- CCCUGUCGUACUUGUGCUUAACA -61
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