MirGeneDB 3.0
MirGeneDB ID

Spu-Mir-252-P2

Family name MIR-252 (all species)
Seed UAAGUAC
Species Purple sea urchin (Strongylocentrotus purpuratus)
MiRBase ID spu-mir-252a
Paralogues Spu-Mir-252-P1 
Orthologues Aae-Mir-252-P2  Aga-Mir-252-P2  Agr-Mir-252-P2  Bfl-Mir-252-P2  Bge-Mir-252-P2-v1  Bge-Mir-252-P2-v2  Bla-Mir-252-P2  Cbr-Mir-252-P2  Cel-Mir-252-P2  Csc-Mir-252-P2k  Csc-Mir-252-P2l-v1  Csc-Mir-252-P2l-v2  Cte-Mir-252-P2  Dan-Mir-252-P2-v1  Dan-Mir-252-P2-v2  Dlo-Mir-252-P2  Dma-Mir-252-P2-v1  Dma-Mir-252-P2-v2  Dme-Mir-252-P2-v1  Dme-Mir-252-P2-v2  Dmo-Mir-252-P2-v1  Dmo-Mir-252-P2-v2  Dpu-Mir-252-P2-v1  Dpu-Mir-252-P2-v2  Dsi-Mir-252-P2-v1  Dsi-Mir-252-P2-v2  Dya-Mir-252-P2-v1  Dya-Mir-252-P2-v2  Eba-Mir-252-P2  Gpa-Mir-252-P2  Hme-Mir-252-P2  Hru-Mir-252-P2  Isc-Mir-252-P2-v1  Isc-Mir-252-P2-v2  Lan-Mir-252-P2  Lgi-Mir-252-P2  Llo-Mir-252-P2  Lpo-Mir-252-P2c  Lpo-Mir-252-P2d  Mgi-Mir-252-P2  Mom-Mir-252-P2  Npo-Mir-252-P2  Ofu-Mir-252-P2  Pau-Mir-252-P2  Pcr-Mir-252-P2  Pdu-Mir-252-P2  Pfl-Mir-252-P2  Pmi-Mir-252-P2  Pve-Mir-252-P2  Sko-Mir-252-P2  Snu-Mir-252-P2  Tca-Mir-252-P2  Tur-Mir-252-P2-v1  Tur-Mir-252-P2-v2  War-Mir-252-P2  Xbo-Mir-252-P2 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Spur_5.0)		 AAGJ06000015.1: 476786-476869 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-252-P2)		 Mir-2001 AAGJ06000015.1: 468208-468268 [+] Ensembl
Mir-252-P1 AAGJ06000015.1: 475408-475467 [+] Ensembl
Mir-252-P2 AAGJ06000015.1: 476786-476869 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
ACGUCGCUAAACACGUGACUAUGUUCCGUCCUAAGUACUAGUGCCGUAGGUUAACUGAGAAGGAAAGUGAAGCUAGACUAUAGCUUCUCAGACCUGUAGUACUAGUACUUAACAUGGCACAAGUCGAAUUCACCGUGGAAGCUU
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Structure
        10           20        30        40        50        60        70 
ACGUCGCUAAACACGUG---|  A   U    CC             CG      AACUGAGAAGGAAAGUGA 
                    ACU UGU CCGU  UAAGUACUAGUGC  UAGGUU                  A
                    UGA ACA GGUA  AUUCAUGAUCAUG  GUCCAG                  G
UUCGAAGGUGCCACUUAAGC^  -   C    CA             AU      ACUCUUCGAUAUCAGAUC 
  140       130        120       110       100        90        80
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
32 Bl Eg Ga Ov Pl To To
Mature sequence

Spu-Mir-252-P2_5p
mirBase accessionMIMAT0009672
Sequence 
0- CUAAGUACUAGUGCCGUAGGUU -22
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Star sequence

Spu-Mir-252-P2_3p*
mirBase accessionNone
Sequence 
62- CCUGUAGUACUAGUACUUAACA -84
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