MirGeneDB 3.0
MirGeneDB ID

Mgi-Mir-252-P2

Family name MIR-252 (all species)
Seed UAAGUAC
Species Pacific oyster (Magallana gigas)
MiRBase ID
Paralogues Mgi-Mir-252-P1 
Orthologues Aae-Mir-252-P2  Aga-Mir-252-P2  Agr-Mir-252-P2  Bfl-Mir-252-P2  Bge-Mir-252-P2-v1  Bge-Mir-252-P2-v2  Bla-Mir-252-P2  Cbr-Mir-252-P2  Cel-Mir-252-P2  Csc-Mir-252-P2k  Csc-Mir-252-P2l-v1  Csc-Mir-252-P2l-v2  Cte-Mir-252-P2  Dan-Mir-252-P2-v1  Dan-Mir-252-P2-v2  Dlo-Mir-252-P2  Dma-Mir-252-P2-v1  Dma-Mir-252-P2-v2  Dme-Mir-252-P2-v1  Dme-Mir-252-P2-v2  Dmo-Mir-252-P2-v1  Dmo-Mir-252-P2-v2  Dpu-Mir-252-P2-v1  Dpu-Mir-252-P2-v2  Dsi-Mir-252-P2-v1  Dsi-Mir-252-P2-v2  Dya-Mir-252-P2-v1  Dya-Mir-252-P2-v2  Eba-Mir-252-P2  Gpa-Mir-252-P2  Hme-Mir-252-P2  Hru-Mir-252-P2  Isc-Mir-252-P2-v1  Isc-Mir-252-P2-v2  Lan-Mir-252-P2  Lgi-Mir-252-P2  Llo-Mir-252-P2  Lpo-Mir-252-P2c  Lpo-Mir-252-P2d  Mom-Mir-252-P2  Npo-Mir-252-P2  Ofu-Mir-252-P2  Pau-Mir-252-P2  Pcr-Mir-252-P2  Pdu-Mir-252-P2  Pfl-Mir-252-P2  Pmi-Mir-252-P2  Pve-Mir-252-P2  Sko-Mir-252-P2  Snu-Mir-252-P2  Spu-Mir-252-P2  Tca-Mir-252-P2  Tur-Mir-252-P2-v1  Tur-Mir-252-P2-v2  War-Mir-252-P2  Xbo-Mir-252-P2 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(CGI_GCA_000297895.1)		 scaffold1366: 106402-106459 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AUGACAUCAAGACGAGAUUUUAACCCAUUCUUAAGUACUUGUGCCGCGGGAAAGUCUUUGAAUCUUCCCAUGGAUCAAGUAUUUAAUAUCGGGAUUAUUCGAUCUUCAGACAAAUGGC
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Structure
        10        20          30        40        50        
AUGACAUCAAGACGAGAUUUUAA--|  AUUC           UG   C     AGUCU 
                         CCC    UUAAGUACUUG  CCG GGGAA     U
                         GGG    AAUUUAUGAAC  GGU CCCUU     U
CGGUAAACAGACUUCUAGCUUAUUA^  CUAU           UA   A     CUAAG 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
A- D- D- F- L- Ea Eg Fe Gi Ha He Ju La Ma Ma Ma Pe Re Sp Um
Mature sequence

Mgi-Mir-252-P2_5p
mirBase accessionNone
Sequence 
0- UUAAGUACUUGUGCCGCGGGAA -22
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Star sequence

Mgi-Mir-252-P2_3p*
mirBase accessionNone
Sequence 
36- CCCAUGGAUCAAGUAUUUAAUA -58
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