MirGeneDB 3.0
MirGeneDB ID

Mgi-Mir-252-P1

Family name MIR-252 (all species)
Seed UAAGUAG
Species Pacific oyster (Magallana gigas)
MiRBase ID
Paralogues Mgi-Mir-252-P2 
Orthologues Agr-Mir-252-P1  Asu-Mir-252-P1  Bfl-Mir-252-P1-v1  Bfl-Mir-252-P1-v2  Bge-Mir-252-P1  Bla-Mir-252-P1-v1  Bla-Mir-252-P1-v2  Cbr-Mir-252-P1  Cel-Mir-252-P1  Csc-Mir-252-P1k  Csc-Mir-252-P1l  Cte-Mir-252-P1  Dan-Mir-252-P1a  Dan-Mir-252-P1b  Dgr-Mir-252-P1  Dlo-Mir-252-P1  Dma-Mir-252-P1  Dme-Mir-252-P1a  Dme-Mir-252-P1b  Dmo-Mir-252-P1a  Dmo-Mir-252-P1b  Dpu-Mir-252-P1  Dsi-Mir-252-P1a  Dsi-Mir-252-P1b  Dya-Mir-252-P1a  Dya-Mir-252-P1b  Eba-Mir-252-P1  Esc-Mir-252-P1  Hme-Mir-252-P1  Hmi-Mir-252-P1  Hru-Mir-252-P1  Isc-Mir-252-P1  Lan-Mir-252-P1  Lgi-Mir-252-P1  Lhy-Mir-252-P1  Llo-Mir-252-P1  Lpo-Mir-252-P1c  Lpo-Mir-252-P1e  Lpo-Mir-252-P1f  Mom-Mir-252-P1  Npo-Mir-252-P1  Obi-Mir-252-P1  Ofu-Mir-252-P1  Ovu-Mir-252-P1  Pau-Mir-252-P1  Pca-Mir-252-P1  Pdu-Mir-252-P1  Pfl-Mir-252-P1  Pmi-Mir-252-P1  Rph-Mir-252-P1  Sko-Mir-252-P1  Snu-Mir-252-P1  Spu-Mir-252-P1  Sro-Mir-252-P1o1  Sro-Mir-252-P1o2  Tca-Mir-252-P1  Tur-Mir-252-P1  War-Mir-252-P1  Xbo-Mir-252-P1g  Xbo-Mir-252-P1h  Xbo-Mir-252-P1i  Xbo-Mir-252-P1j 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(CGI_GCA_000297895.1)		 scaffold1366: 96960-97021 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
ACCUCCUCCUGUUGUCUAGCCGCUCCCGUGUUAAGUAGUGGUGCCGCAGGUACAAGCUAUACUCGAGUCUACCGGCGCAUCUCUACUUUACUCGGGGUUUGGCCUCGGUUAAUGAUAACGAC
Get precursor sequence
Structure
        10         20         30        40        50        60 
ACCUCCUCCUGUUGUCUA-    C-|    U  U      U     C  A    CAAGCUAU 
                   GCCG  UCCCG GU AAGUAG GGUGC GC GGUA        \
                   CGGU  GGGGC CA UUCAUC CUACG CG CCAU        A
CAGCAAUAGUAAUUGGCUC    UU^    U  U      U     -  G    CUGAGCUC 
120       110       100        90        80         70
Deep sequencing
Go to detailed chart
CommentThere is a second Dicer cut +1 on both arms.
3' NTU No
MotifsNo
Tissue expression
-   +
A- D- D- F- L- Ea Eg Fe Gi Ha He Ju La Ma Ma Ma Pe Re Sp Um
Mature sequence

Mgi-Mir-252-P1_5p
mirBase accessionNone
Sequence 
0- UUAAGUAGUGGUGCCGCAGGUAC -23
Get sequence
Star sequence

Mgi-Mir-252-P1_3p*
mirBase accessionNone
Sequence 
40- ACCGGCGCAUCUCUACUUUACU -62
Get sequence