MirGeneDB 2.1

MirGeneDB ID

Xbo-Mir-252-P1g

Family name MIR-252 (all species)
Seed UAAGUAG
Species Xenoturbella (Xenoturbella bocki)
MiRBase ID
Paralogues Xbo-Mir-252-P1h  Xbo-Mir-252-P1i  Xbo-Mir-252-P2g  Xbo-Mir-252-P2h 
Orthologues Asu-Mir-252-P1  Bfl-Mir-252-P1-v1  Bfl-Mir-252-P1-v2  Bge-Mir-252-P1  Bla-Mir-252-P1-v1  Bla-Mir-252-P1-v2  Cbr-Mir-252-P1  Cel-Mir-252-P1  Cgi-Mir-252-P1  Csc-Mir-252-P1  Cte-Mir-252-P1  Dma-Mir-252-P1-v1  Dma-Mir-252-P1-v2  Dpu-Mir-252-P1  Esc-Mir-252-P1  Hme-Mir-252-P1  Isc-Mir-252-P1  Lan-Mir-252-P1  Lgi-Mir-252-P1  Npo-Mir-252-P1  Obi-Mir-252-P1  Ovu-Mir-252-P1  Pfl-Mir-252-P1  Pmi-Mir-252-P1  Sko-Mir-252-P1  Spu-Mir-252-P1  Tca-Mir-252-P1 
Node of Origin (locus) X. bocki
Node of Origin (family) Bilateria
Genome context
(Xbocki_plus)
3C-assembly_contig_1901: 5657340-5657395 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACAAAGAAGUUUGUUUUGGCGGUGGCCUCUCUAAGUAGUAGUGCCGCAGGUAAGAACGUAAAUUACCUGCACAUUGCUGCUUAUUCAGGACGCUGGCCCCAUUCUACGAAAAAAAA
Get precursor sequence
Structure
        10          20        30        40        50        
ACAAAGAAGUUUGUUUU-  -|    G   CUC            CC       AGAAC 
                  GG CGGUG CCU   UAAGUAGUAGUG  GCAGGUA     \
                  CC GUCGC GGA   AUUCGUCGUUAC  CGUCCAU     G
AAAAAAAAGCAUCUUACC  G^    A   CUU            A-       UAAAU 
    110       100        90        80         70        60
Deep sequencing
Go to detailed chart
Commentcoupled with Mir-2001
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
To To To
Mature sequence

Xbo-Mir-252-P1g_5p

mirBase accessionNone
Sequence
0- CUAAGUAGUAGUGCCGCAGGUA -22
Get sequence
Star sequence

Xbo-Mir-252-P1g_3p* (predicted)

mirBase accessionNone
Sequence
35- CCUGCACAUUGCUGCUUAUUC -56
Get sequence