MirGeneDB ID | Isc-Mir-252-P1 |
Family name |
MIR-252 (all species) |
Seed |
UAAGUAG |
Species |
Deer tick (Ixodes scapularis) |
MiRBase ID |
isc-mir-252b
|
Paralogues |
Isc-Mir-252-P2-v1
Isc-Mir-252-P2-v2
|
Orthologues |
Asu-Mir-252-P1
Bfl-Mir-252-P1-v1
Bfl-Mir-252-P1-v2
Bge-Mir-252-P1
Bla-Mir-252-P1-v1
Bla-Mir-252-P1-v2
Cbr-Mir-252-P1
Cel-Mir-252-P1
Cgi-Mir-252-P1
Csc-Mir-252-P1
Cte-Mir-252-P1
Dan-Mir-252-P1a
Dan-Mir-252-P1b
Dma-Mir-252-P1-v1
Dma-Mir-252-P1-v2
Dme-Mir-252-P1a
Dme-Mir-252-P1b
Dmo-Mir-252-P1a
Dmo-Mir-252-P1b
Dpu-Mir-252-P1
Dsi-Mir-252-P1a
Dsi-Mir-252-P1b
Dya-Mir-252-P1a
Dya-Mir-252-P1b
Esc-Mir-252-P1
Hme-Mir-252-P1
Lan-Mir-252-P1
Lgi-Mir-252-P1
Lpo-Mir-252-P1c
Lpo-Mir-252-P1e
Lpo-Mir-252-P1f
Npo-Mir-252-P1
Obi-Mir-252-P1
Ovu-Mir-252-P1
Pfl-Mir-252-P1
Pmi-Mir-252-P1
Sko-Mir-252-P1
Spu-Mir-252-P1
Tca-Mir-252-P1
Xbo-Mir-252-P1g
Xbo-Mir-252-P1h
Xbo-Mir-252-P1i
|
Node of Origin (locus) |
Bilateria
|
Node of Origin (family) |
Bilateria
|
Genome context (IscaWI) |
DS871365: 29534-29593 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAUGCUGCCAACAUGGUGUGUUUUAGUCCUUUAAGUAGUAGUGCCGCAGGUAAGGGCUUGCCACUGUUACCUGCACACAACUGCUUGACUGAUUAAAUCACUGAAACGCAACGCGAACGC
Get precursor sequence
|
Structure | 10 20 30 40 50
AAUGCUGCCAACAUGGU--| U CU A CC GGGCUU
GUG UUUAGUC UUAAGUAGU GUG GCAGGUAA \
CAC AAAUUAG AGUUCGUCA CAC CGUCCAUU G
CGCAAGCGCAACGCAAAGU^ U UC A A- GUCACC
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14) |
Tissue expression
|
Al |
Mi |
Mi |
Mi |
Sa |
Sa |
Sa |
Sa |
To |
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Mature sequence |
Isc-Mir-252-P1_5p |
mirBase accession | MIMAT0012691 |
Sequence |
0- UUAAGUAGUAGUGCCGCAGGUAA -23
Get sequence
|
Star sequence |
Isc-Mir-252-P1_3p* |
mirBase accession | None |
Sequence |
38- ACCUGCACACAACUGCUUGACU -60
Get sequence
|