MirGeneDB 3.0
MirGeneDB ID

Dpu-Mir-252-P1

Family name MIR-252 (all species)
Seed UAAGUAG
Species Common water flea (Daphnia pulex)
MiRBase ID dpu-mir-252b
Paralogues Dpu-Mir-252-P2-v1  Dpu-Mir-252-P2-v2 
Orthologues Agr-Mir-252-P1  Asu-Mir-252-P1  Bfl-Mir-252-P1-v1  Bfl-Mir-252-P1-v2  Bge-Mir-252-P1  Bla-Mir-252-P1-v1  Bla-Mir-252-P1-v2  Cbr-Mir-252-P1  Cel-Mir-252-P1  Csc-Mir-252-P1k  Csc-Mir-252-P1l  Cte-Mir-252-P1  Dan-Mir-252-P1a  Dan-Mir-252-P1b  Dgr-Mir-252-P1  Dlo-Mir-252-P1  Dma-Mir-252-P1  Dme-Mir-252-P1a  Dme-Mir-252-P1b  Dmo-Mir-252-P1a  Dmo-Mir-252-P1b  Dsi-Mir-252-P1a  Dsi-Mir-252-P1b  Dya-Mir-252-P1a  Dya-Mir-252-P1b  Eba-Mir-252-P1  Esc-Mir-252-P1  Hme-Mir-252-P1  Hmi-Mir-252-P1  Hru-Mir-252-P1  Isc-Mir-252-P1  Lan-Mir-252-P1  Lgi-Mir-252-P1  Lhy-Mir-252-P1  Llo-Mir-252-P1  Lpo-Mir-252-P1c  Lpo-Mir-252-P1e  Lpo-Mir-252-P1f  Mgi-Mir-252-P1  Mom-Mir-252-P1  Npo-Mir-252-P1  Obi-Mir-252-P1  Ofu-Mir-252-P1  Ovu-Mir-252-P1  Pau-Mir-252-P1  Pca-Mir-252-P1  Pdu-Mir-252-P1  Pfl-Mir-252-P1  Pmi-Mir-252-P1  Rph-Mir-252-P1  Sko-Mir-252-P1  Snu-Mir-252-P1  Spu-Mir-252-P1  Sro-Mir-252-P1o1  Sro-Mir-252-P1o2  Tca-Mir-252-P1  Tur-Mir-252-P1  War-Mir-252-P1  Xbo-Mir-252-P1g  Xbo-Mir-252-P1h  Xbo-Mir-252-P1i  Xbo-Mir-252-P1j 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Daphnia_pulex.V1.0)		 DAPPUscaffold_8: 127380-127444 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CCGAUUAGUGUAAAUUUGGUUAUGAGGUCGCUAAGUAGUAGUGCCGCAGGUAAUUGCUAUUAAAUCUCAUAUUACCUGGACAAGGCUACUUAACGUUCUUUUAACUUUAAACGACUUGAAAACUU
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Structure
        10          20        30        40        50        60  
CCGAUUAGUGUAAAUUU--|    U   GU  C        AG  CCG       UUGCUAUU 
                   GGUUA GAG  CG UAAGUAGU  UG   CAGGUAA        A
                   UCAAU UUC  GC AUUCAUCG  AC   GUCCAUU        A
UUCAAAAGUUCAGCAAAUU^    U   UU  A        GA  AG-       AUACUCUA 
   120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Dpu-Mir-252-P1_5p
mirBase accessionMIMAT0012648
Sequence 
0- CUAAGUAGUAGUGCCGCAGGUAA -23
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Star sequence

Dpu-Mir-252-P1_3p*
mirBase accessionNone
Sequence 
43- ACCUGGACAAGGCUACUUAACG -65
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