MirGeneDB 3.0
MirGeneDB ID

Bla-Mir-252-P1-v1

Family name MIR-252 (all species)
Seed UAAGUAG
Species European lancelet (Branchiostoma lanceolatum)
MiRBase ID
Paralogues Bla-Mir-252-P1-v2  Bla-Mir-252-P2 
Orthologues Agr-Mir-252-P1  Asu-Mir-252-P1  Bfl-Mir-252-P1-v1  Bfl-Mir-252-P1-v2  Bge-Mir-252-P1  Cbr-Mir-252-P1  Cel-Mir-252-P1  Csc-Mir-252-P1k  Csc-Mir-252-P1l  Cte-Mir-252-P1  Dan-Mir-252-P1a  Dan-Mir-252-P1b  Dgr-Mir-252-P1  Dlo-Mir-252-P1  Dma-Mir-252-P1  Dme-Mir-252-P1a  Dme-Mir-252-P1b  Dmo-Mir-252-P1a  Dmo-Mir-252-P1b  Dpu-Mir-252-P1  Dsi-Mir-252-P1a  Dsi-Mir-252-P1b  Dya-Mir-252-P1a  Dya-Mir-252-P1b  Eba-Mir-252-P1  Esc-Mir-252-P1  Hme-Mir-252-P1  Hmi-Mir-252-P1  Hru-Mir-252-P1  Isc-Mir-252-P1  Lan-Mir-252-P1  Lgi-Mir-252-P1  Lhy-Mir-252-P1  Llo-Mir-252-P1  Lpo-Mir-252-P1c  Lpo-Mir-252-P1e  Lpo-Mir-252-P1f  Mgi-Mir-252-P1  Mom-Mir-252-P1  Npo-Mir-252-P1  Obi-Mir-252-P1  Ofu-Mir-252-P1  Ovu-Mir-252-P1  Pau-Mir-252-P1  Pca-Mir-252-P1  Pdu-Mir-252-P1  Pfl-Mir-252-P1  Pmi-Mir-252-P1  Rph-Mir-252-P1  Sko-Mir-252-P1  Snu-Mir-252-P1  Spu-Mir-252-P1  Sro-Mir-252-P1o1  Sro-Mir-252-P1o2  Tca-Mir-252-P1  Tur-Mir-252-P1  War-Mir-252-P1  Xbo-Mir-252-P1g  Xbo-Mir-252-P1h  Xbo-Mir-252-P1i  Xbo-Mir-252-P1j 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(BraLan2)		 Sc0000329: 50652-50716 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UAGUUUGAGAUGAAAGCGACUGUCUCUGUGCUAAGUAGUACUGCCGCAGGGAGUGCUGCGGACUGAUUCUAUCCCCUGCGCAGUCCUACUUACAACAGGGAACAUUUCUAAUGCUUCAAACUGCA
Get precursor sequence
Structure
        10        20          30        40        50        60  
UAGUUUGAGAUGAAAGCGAC-  -|      GC       U     C      AGUGCUGCGG 
                     UG UCUCUGU  UAAGUAG ACUGC GCAGGG          A
                     AC AGGGACA  AUUCAUC UGACG CGUCCC          C
ACGUCAAACUUCGUAAUCUUU  A^      AC       C     -      CUAUCUUAGU 
   120       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUGUG in loop
Tissue expression
-   +
Ad Ad Em Em Em Em
Mature sequence

Bla-Mir-252-P1-v1_5p
mirBase accessionNone
Sequence 
0- CUAAGUAGUACUGCCGCAGGGA -22
Get sequence
Star sequence

Bla-Mir-252-P1-v1_3p*
mirBase accessionNone
Sequence 
44- CCUGCGCAGUCCUACUUACAA -65
Get sequence