MirGeneDB 3.0

MirGeneDB ID

Mom-Mir-252-P1

Family name MIR-252 (all species)
Seed UAAGUAG
Species Mossy chiton (Mopalia muscosa)
MiRBase ID
Paralogues Mom-Mir-252-P2 
Orthologues Agr-Mir-252-P1  Asu-Mir-252-P1  Bfl-Mir-252-P1-v1  Bfl-Mir-252-P1-v2  Bge-Mir-252-P1  Bla-Mir-252-P1-v1  Bla-Mir-252-P1-v2  Cbr-Mir-252-P1  Cel-Mir-252-P1  Csc-Mir-252-P1k  Csc-Mir-252-P1l  Cte-Mir-252-P1  Dan-Mir-252-P1a  Dan-Mir-252-P1b  Dgr-Mir-252-P1  Dlo-Mir-252-P1  Dma-Mir-252-P1  Dme-Mir-252-P1a  Dme-Mir-252-P1b  Dmo-Mir-252-P1a  Dmo-Mir-252-P1b  Dpu-Mir-252-P1  Dsi-Mir-252-P1a  Dsi-Mir-252-P1b  Dya-Mir-252-P1a  Dya-Mir-252-P1b  Eba-Mir-252-P1  Esc-Mir-252-P1  Hme-Mir-252-P1  Hmi-Mir-252-P1  Hru-Mir-252-P1  Isc-Mir-252-P1  Lan-Mir-252-P1  Lgi-Mir-252-P1  Lhy-Mir-252-P1  Llo-Mir-252-P1  Lpo-Mir-252-P1c  Lpo-Mir-252-P1e  Lpo-Mir-252-P1f  Mgi-Mir-252-P1  Npo-Mir-252-P1  Obi-Mir-252-P1  Ofu-Mir-252-P1  Ovu-Mir-252-P1  Pau-Mir-252-P1  Pca-Mir-252-P1  Pdu-Mir-252-P1  Pfl-Mir-252-P1  Pmi-Mir-252-P1  Rph-Mir-252-P1  Sko-Mir-252-P1  Snu-Mir-252-P1  Spu-Mir-252-P1  Sro-Mir-252-P1o1  Sro-Mir-252-P1o2  Tca-Mir-252-P1  Tur-Mir-252-P1  War-Mir-252-P1  Xbo-Mir-252-P1g  Xbo-Mir-252-P1h  Xbo-Mir-252-P1i  Xbo-Mir-252-P1j 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(GCA_031763545.1_ASM3176354v1_genomic_Mom)
JARFOD010132739.1: 22688-22745 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UGGUGAUGAUCUGACUUUAUACUGGACGUUAUAAGUAGUGGUGCCGCAGGUAGUGUUUUAACCGAUACCUGUACAUCCCUGCUUACUCCGUCCUUUGGUAACCCCUGUAUUCCUGCAC
Get precursor sequence
Structure
        10        20           30        40        50         
UGGUGAUGAUCUGACUUUA    ---|    UUA       U    CC       GUGUUU 
                   UACU   GGACG   UAAGUAG GGUG  GCAGGUA      \
                   AUGG   CCUGC   AUUCGUC CUAC  UGUCCAU      U
CACGUCCUUAUGUCCCCA-    UUU^    CUC       C    A-       AGCCAA 
      110        100        90        80         70        60
Deep sequencing
3' NTU Unknown
MotifsUGUG in loop
Tissue expression
 +
Is
Mature sequence

Mom-Mir-252-P1_5p (predicted)

mirBase accessionNone
Sequence
0- AUAAGUAGUGGUGCCGCAGGUA -22
Get sequence
Star sequence

Mom-Mir-252-P1_3p* (predicted)

mirBase accessionNone
Sequence
37- CCUGUACAUCCCUGCUUACUC -58
Get sequence