Mir-252-P1

MirGeneDB ID

Mom-Mir-252-P1

Family name

MIR-252 (all species)

Seed

UAAGUAG

Species

Mossy chiton (Mopalia muscosa)

MiRBase ID

Paralogues

Mom-Mir-252-P2

Orthologues

Agr-Mir-252-P1 Asu-Mir-252-P1 Bfl-Mir-252-P1-v1 Bfl-Mir-252-P1-v2 Bge-Mir-252-P1 Bla-Mir-252-P1-v1 Bla-Mir-252-P1-v2 Cbr-Mir-252-P1 Cel-Mir-252-P1 Csc-Mir-252-P1k Csc-Mir-252-P1l Cte-Mir-252-P1 Dan-Mir-252-P1a Dan-Mir-252-P1b Dgr-Mir-252-P1 Dlo-Mir-252-P1 Dma-Mir-252-P1 Dme-Mir-252-P1a Dme-Mir-252-P1b Dmo-Mir-252-P1a Dmo-Mir-252-P1b Dpu-Mir-252-P1 Dsi-Mir-252-P1a Dsi-Mir-252-P1b Dya-Mir-252-P1a Dya-Mir-252-P1b Eba-Mir-252-P1 Esc-Mir-252-P1 Hme-Mir-252-P1 Hmi-Mir-252-P1 Hru-Mir-252-P1 Isc-Mir-252-P1 Lan-Mir-252-P1 Lgi-Mir-252-P1 Lhy-Mir-252-P1 Llo-Mir-252-P1 Lpo-Mir-252-P1c Lpo-Mir-252-P1e Lpo-Mir-252-P1f Mgi-Mir-252-P1 Npo-Mir-252-P1 Obi-Mir-252-P1 Ofu-Mir-252-P1 Ovu-Mir-252-P1 Pau-Mir-252-P1 Pca-Mir-252-P1 Pdu-Mir-252-P1 Pfl-Mir-252-P1 Pmi-Mir-252-P1 Rph-Mir-252-P1 Sko-Mir-252-P1 Snu-Mir-252-P1 Spu-Mir-252-P1 Sro-Mir-252-P1o1 Sro-Mir-252-P1o2 Tca-Mir-252-P1 Tur-Mir-252-P1 War-Mir-252-P1 Xbo-Mir-252-P1g Xbo-Mir-252-P1h Xbo-Mir-252-P1i Xbo-Mir-252-P1j

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(GCA_031763545.1_ASM3176354v1_genomic_Mom)

JARFOD010132739.1: 22688-22745 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

UGGUGAUGAUCUGACUUUAUACUGGACGUUAUAAGUAGUGGUGCCGCAGGUAGUGUUUUAACCGAUACCUGUACAUCCCUGCUUACUCCGUCCUUUGGUAACCCCUGUAUUCCUGCAC

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Structure

        10        20           30        40        50         
UGGUGAUGAUCUGACUUUA    ---|    UUA       U    CC       GUGUUU 
                   UACU   GGACG   UAAGUAG GGUG  GCAGGUA      \
                   AUGG   CCUGC   AUUCGUC CUAC  UGUCCAU      U
CACGUCCUUAUGUCCCCA-    UUU^    CUC       C    A-       AGCCAA 
      110        100        90        80         70        60

Deep sequencing

3' NTU

Unknown

Motifs

UGUG in loop

Tissue expression

To

Mature sequence

Mom-Mir-252-P1_5p (predicted)

mirBase accession

None

Sequence

0- AUAAGUAGUGGUGCCGCAGGUA -22

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Star sequence

Mom-Mir-252-P1_3p* (predicted)

mirBase accession

None

Sequence

37- CCUGUACAUCCCUGCUUACUC -58

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