MirGeneDB 3.0

MirGeneDB ID

Csc-Mir-252-P1l

Family name MIR-252 (all species)
Seed UAAGUAG
Species Arizona bark scorpion (Centruroides sculpturatus)
MiRBase ID
Paralogues Csc-Mir-252-P1k  Csc-Mir-252-P2k  Csc-Mir-252-P2l-v1  Csc-Mir-252-P2l-v2 
Orthologues Agr-Mir-252-P1  Asu-Mir-252-P1  Bfl-Mir-252-P1-v1  Bfl-Mir-252-P1-v2  Bge-Mir-252-P1  Bla-Mir-252-P1-v1  Bla-Mir-252-P1-v2  Cbr-Mir-252-P1  Cel-Mir-252-P1  Cte-Mir-252-P1  Dgr-Mir-252-P1  Dlo-Mir-252-P1  Dma-Mir-252-P1  Dpu-Mir-252-P1  Eba-Mir-252-P1  Esc-Mir-252-P1  Hme-Mir-252-P1  Hmi-Mir-252-P1  Hru-Mir-252-P1  Isc-Mir-252-P1  Lan-Mir-252-P1  Lgi-Mir-252-P1  Lhy-Mir-252-P1  Llo-Mir-252-P1  Mgi-Mir-252-P1  Mom-Mir-252-P1  Npo-Mir-252-P1  Obi-Mir-252-P1  Ofu-Mir-252-P1  Ovu-Mir-252-P1  Pau-Mir-252-P1  Pca-Mir-252-P1  Pdu-Mir-252-P1  Pfl-Mir-252-P1  Pmi-Mir-252-P1  Rph-Mir-252-P1  Sko-Mir-252-P1  Snu-Mir-252-P1  Spu-Mir-252-P1  Tca-Mir-252-P1  Tur-Mir-252-P1  War-Mir-252-P1 
Node of Origin (locus) C. sculpturatus
Node of Origin (family) Bilateria
Genome context
(GCF_000671375.1_CSC)
NW_019387483.1: 7658-7716 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AGAGAUGCUACAAUGUUUCGGUUCUGCCUUCUAAGUAGUCUUGCCGCAGGUGACAUUUGAAUUAUUUACCUGCACACGACUACUUAUGAGGUUGAACUAGUUCCUAAUCGGCGAAAAUG
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Structure
        10          20        30        40        50         
AGAGAUGCUACAAUGUUUC--|    U     C         U  CC        CAUUU 
                     GGUUC GCCUU UAAGUAGUC UG  GCAGGUGA     G
                     UCAAG UGGAG AUUCAUCAG AC  CGUCCAUU     A
GUAAAAGCGGCUAAUCCUUGA^    U     U         C  A-        UAUUA 
       110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Fe Fe Fe Fe Ma Ma Ma
Mature sequence

Csc-Mir-252-P1l_5p

mirBase accessionNone
Sequence
0- CUAAGUAGUCUUGCCGCAGGUGA -23
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Star sequence

Csc-Mir-252-P1l_3p*

mirBase accessionNone
Sequence
37- ACCUGCACACGACUACUUAUGA -59
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