Mir-252-P1k

MirGeneDB ID

Csc-Mir-252-P1k

Family name

MIR-252 (all species)

Seed

UAAGUAG

Species

Arizona bark scorpion (Centruroides sculpturatus)

MiRBase ID

Paralogues

Csc-Mir-252-P1l Csc-Mir-252-P2k Csc-Mir-252-P2l-v1 Csc-Mir-252-P2l-v2

Orthologues

Agr-Mir-252-P1 Asu-Mir-252-P1 Bfl-Mir-252-P1-v1 Bfl-Mir-252-P1-v2 Bge-Mir-252-P1 Bla-Mir-252-P1-v1 Bla-Mir-252-P1-v2 Cbr-Mir-252-P1 Cel-Mir-252-P1 Cte-Mir-252-P1 Dgr-Mir-252-P1 Dlo-Mir-252-P1 Dma-Mir-252-P1 Dpu-Mir-252-P1 Eba-Mir-252-P1 Esc-Mir-252-P1 Hme-Mir-252-P1 Hmi-Mir-252-P1 Hru-Mir-252-P1 Isc-Mir-252-P1 Lan-Mir-252-P1 Lgi-Mir-252-P1 Lhy-Mir-252-P1 Llo-Mir-252-P1 Mgi-Mir-252-P1 Mom-Mir-252-P1 Npo-Mir-252-P1 Obi-Mir-252-P1 Ofu-Mir-252-P1 Ovu-Mir-252-P1 Pau-Mir-252-P1 Pca-Mir-252-P1 Pdu-Mir-252-P1 Pfl-Mir-252-P1 Pmi-Mir-252-P1 Rph-Mir-252-P1 Sko-Mir-252-P1 Snu-Mir-252-P1 Spu-Mir-252-P1 Tca-Mir-252-P1 Tur-Mir-252-P1 War-Mir-252-P1

Node of Origin (locus)

C. sculpturatus

Node of Origin (family)

Bilateria

Genome context
(GCF_000671375.1_CSC)

NW_019384632.1: 328041-328098 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

ACUAUGUAGGUGAACAUGACAAUCUGGAUGCUAAGUAGUAGUGCCGCAGGUAAUAUUUUCAUACUUACUUGCACACGACUGCUUAAUAUUUAGUUUGUCGCAUCAUCUAAACAUAGAA

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Structure

        10          20        30        40        50         
ACUAUGUAGGUGAACAU--|    U       C        A   CC        UAUUU 
                   GACAA CUGGAUG UAAGUAGU GUG  GCAGGUAA     \
                   CUGUU GAUUUAU AUUCGUCA CAC  CGUUCAUU     U
AAGAUACAAAUCUACUACG^    U       A        G   A-        CAUAC 
      110       100        90        80         70        60

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Fe	Fe	Fe	Fe	Ma	Ma	Ma

Mature sequence

Csc-Mir-252-P1k_5p

mirBase accession

None

Sequence

0- CUAAGUAGUAGUGCCGCAGGUAA -23

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Star sequence

Csc-Mir-252-P1k_3p*

mirBase accession

None

Sequence

36- ACUUGCACACGACUGCUUAAUA -58

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