Mir-252-P1

MirGeneDB ID

Cel-Mir-252-P1

Family name

MIR-252 (all species)

Seed

UAAGUAG

Species

Roundworm (Caenorhabditis elegans)

MiRBase ID

cel-mir-251

Paralogues

Cel-Mir-252-P2

Orthologues

Agr-Mir-252-P1 Asu-Mir-252-P1 Bfl-Mir-252-P1-v1 Bfl-Mir-252-P1-v2 Bge-Mir-252-P1 Bla-Mir-252-P1-v1 Bla-Mir-252-P1-v2 Cbr-Mir-252-P1 Csc-Mir-252-P1k Csc-Mir-252-P1l Cte-Mir-252-P1 Dan-Mir-252-P1a Dan-Mir-252-P1b Dgr-Mir-252-P1 Dlo-Mir-252-P1 Dma-Mir-252-P1 Dme-Mir-252-P1a Dme-Mir-252-P1b Dmo-Mir-252-P1a Dmo-Mir-252-P1b Dpu-Mir-252-P1 Dsi-Mir-252-P1a Dsi-Mir-252-P1b Dya-Mir-252-P1a Dya-Mir-252-P1b Eba-Mir-252-P1 Esc-Mir-252-P1 Hme-Mir-252-P1 Hmi-Mir-252-P1 Hru-Mir-252-P1 Isc-Mir-252-P1 Lan-Mir-252-P1 Lgi-Mir-252-P1 Lhy-Mir-252-P1 Llo-Mir-252-P1 Lpo-Mir-252-P1c Lpo-Mir-252-P1e Lpo-Mir-252-P1f Mgi-Mir-252-P1 Mom-Mir-252-P1 Npo-Mir-252-P1 Obi-Mir-252-P1 Ofu-Mir-252-P1 Ovu-Mir-252-P1 Pau-Mir-252-P1 Pca-Mir-252-P1 Pdu-Mir-252-P1 Pfl-Mir-252-P1 Pmi-Mir-252-P1 Rph-Mir-252-P1 Sko-Mir-252-P1 Snu-Mir-252-P1 Spu-Mir-252-P1 Sro-Mir-252-P1o1 Sro-Mir-252-P1o2 Tca-Mir-252-P1 Tur-Mir-252-P1 War-Mir-252-P1 Xbo-Mir-252-P1g Xbo-Mir-252-P1h Xbo-Mir-252-P1i Xbo-Mir-252-P1j

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(ce11)

chrX: 11004746-11004806 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUUAUUAAUUCAACUUUCAAUGACCCCUUGUUAAGUAGUGGUGCCGCUCUUAUUAGGUUGAAAAGUAAUAAGAGUAGUUCACUACUUAUCAAGGUGAAAUUUGAAAUUUUAUUUCAAUGUG

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Structure

        10         20         30        40        50        60
GUUAUUAAUUCAACUUU-   UGACC-|    U          U  CG        AGGUU 
                  CAA      CCUUG UAAGUAGUGG GC  CUCUUAUU     G
                  GUU      GGAAC AUUCAUCACU UG  GAGAAUAA     A
GUGUAACUUUAUUUUAAA   UAAAGU^    U          -  AU        UGAAA 
 .       110       100        90        80         70

Deep sequencing

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3' NTU

Motifs

Tissue expression

Da	Ea	Mi	Wi	Yo	Yo

Mature sequence

Cel-Mir-252-P1_5p

mirBase accession

MIMAT0000307

Sequence

0- UUAAGUAGUGGUGCCGCUCUUAUU -24

Get sequence

Proposed targets

microrna.org: MIMAT0000307
TargetScanWorm: cel-miR-251

Star sequence

Cel-Mir-252-P1_3p*

mirBase accession

None

Sequence

38- UAAGAGUAGUUCACUACUUAUCA -61

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