Mir-252-P1b

MirGeneDB ID

Dmo-Mir-252-P1b

Family name

MIR-252 (all species)

Seed

UAAGUAG

Species

Fruit fly (Drosophila mojavensis)

MiRBase ID

Paralogues

Dmo-Mir-252-P1a Dmo-Mir-252-P2-v1 Dmo-Mir-252-P2-v2

Orthologues

Agr-Mir-252-P1 Asu-Mir-252-P1 Bfl-Mir-252-P1-v1 Bfl-Mir-252-P1-v2 Bge-Mir-252-P1 Bla-Mir-252-P1-v1 Bla-Mir-252-P1-v2 Cbr-Mir-252-P1 Cel-Mir-252-P1 Cte-Mir-252-P1 Dan-Mir-252-P1b Dgr-Mir-252-P1 Dlo-Mir-252-P1 Dma-Mir-252-P1 Dme-Mir-252-P1b Dpu-Mir-252-P1 Dsi-Mir-252-P1b Dya-Mir-252-P1b Eba-Mir-252-P1 Esc-Mir-252-P1 Hme-Mir-252-P1 Hmi-Mir-252-P1 Hru-Mir-252-P1 Isc-Mir-252-P1 Lan-Mir-252-P1 Lgi-Mir-252-P1 Lhy-Mir-252-P1 Llo-Mir-252-P1 Mgi-Mir-252-P1 Mom-Mir-252-P1 Npo-Mir-252-P1 Obi-Mir-252-P1 Ofu-Mir-252-P1 Ovu-Mir-252-P1 Pau-Mir-252-P1 Pca-Mir-252-P1 Pdu-Mir-252-P1 Pfl-Mir-252-P1 Pmi-Mir-252-P1 Rph-Mir-252-P1 Sko-Mir-252-P1 Snu-Mir-252-P1 Spu-Mir-252-P1 Tca-Mir-252-P1 Tur-Mir-252-P1 War-Mir-252-P1

Node of Origin (locus)

Drosophila

Node of Origin (family)

Bilateria

Genome context
(Dmoj_caf1)

scaffold_6500: 16664728-16664788 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

AAAUACUAAGUUUUGAUGAAAAUUCAGCACUUAAGUAGUUGAUACAAAGGCGAAUUUAUUAAAUUUAUCGCAUUGUGUGAGCUACUUAAAUGACAGAUUUUUAUAGUACGACUAAAAUAAU

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Structure

        10          20        30        40        50        60
AAAUACUAAGUUUUGAU--|      CAG  C          G      AG    AUUUAU 
                   GAAAAUU   CA UUAAGUAGUU AUACAA  GCGA      U
                   UUUUUAG   GU AAUUCAUCGA UGUGUU  CGCU      A
UAAUAAAAUCAGCAUGAUA^      ACA  A          G      A-    AUUUAA 
 .       110       100        90        80         70

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Em	Fe	Ma	Ma

Mature sequence

Dmo-Mir-252-P1b_5p

mirBase accession

None

Sequence

0- UUAAGUAGUUGAUACAAAGGCGA -23

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Co-mature sequence

Dmo-Mir-252-P1b_3p

mirBase accession

None

Sequence

39- GCAUUGUGUGAGCUACUUAAAU -61

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