MirGeneDB 3.0

MirGeneDB ID

Dmo-Mir-252-P2-v1

Family name MIR-252 (all species)
Seed UAAGUAC
Species Fruit fly (Drosophila mojavensis)
MiRBase ID
Paralogues Dmo-Mir-252-P1a  Dmo-Mir-252-P1b  Dmo-Mir-252-P2-v2 
Orthologues Aae-Mir-252-P2  Aga-Mir-252-P2  Agr-Mir-252-P2  Bfl-Mir-252-P2  Bge-Mir-252-P2-v1  Bge-Mir-252-P2-v2  Bla-Mir-252-P2  Cbr-Mir-252-P2  Cel-Mir-252-P2  Csc-Mir-252-P2k  Csc-Mir-252-P2l-v1  Csc-Mir-252-P2l-v2  Cte-Mir-252-P2  Dan-Mir-252-P2-v1  Dan-Mir-252-P2-v2  Dlo-Mir-252-P2  Dma-Mir-252-P2-v1  Dma-Mir-252-P2-v2  Dme-Mir-252-P2-v1  Dme-Mir-252-P2-v2  Dpu-Mir-252-P2-v1  Dpu-Mir-252-P2-v2  Dsi-Mir-252-P2-v1  Dsi-Mir-252-P2-v2  Dya-Mir-252-P2-v1  Dya-Mir-252-P2-v2  Eba-Mir-252-P2  Gpa-Mir-252-P2  Hme-Mir-252-P2  Hru-Mir-252-P2  Isc-Mir-252-P2-v1  Isc-Mir-252-P2-v2  Lan-Mir-252-P2  Lgi-Mir-252-P2  Llo-Mir-252-P2  Lpo-Mir-252-P2c  Lpo-Mir-252-P2d  Mgi-Mir-252-P2  Mom-Mir-252-P2  Npo-Mir-252-P2  Ofu-Mir-252-P2  Pau-Mir-252-P2  Pcr-Mir-252-P2  Pdu-Mir-252-P2  Pfl-Mir-252-P2  Pmi-Mir-252-P2  Pve-Mir-252-P2  Sko-Mir-252-P2  Snu-Mir-252-P2  Spu-Mir-252-P2  Tca-Mir-252-P2  Tur-Mir-252-P2-v1  Tur-Mir-252-P2-v2  War-Mir-252-P2  Xbo-Mir-252-P2 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Dmoj_caf1)
scaffold_6540: 10349286-10349352 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AAAACAGAAAACAAAAAACAUAUUGCUUUCCUAAGUACUAGUGCCGCAGGAGUUAGGGUUGUGUCCGCAAUGCCUCCUGCUGCCCAAGUGCUUAUCAAAGCGACGAGUUUUUCAACAGCAGCAAUUA
Get precursor sequence
Structure
        10        20          30        40        50        60   
AAAACAGAAAACAAAAAACAUA--|      CC        AGU  C       UUAGGGUUGU 
                        UUGCUUU  UAAGUACU   GC GCAGGAG          \
                        AGCGAAA  AUUCGUGA   CG CGUCCUC          G
AUUAACGACGACAACUUUUUGAGC^      CU        ACC  U       CGUAACGCCU 
     120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Em Fe Ma Ma
Mature sequence

Dmo-Mir-252-P2-v1_5p

mirBase accessionNone
Sequence
0- CUAAGUACUAGUGCCGCAGGAGU -23
Get sequence
Star sequence

Dmo-Mir-252-P2-v1_3p*

mirBase accessionNone
Sequence
45- CCUGCUGCCCAAGUGCUUAUCA -67
Get sequence