MirGeneDB 3.0

MirGeneDB ID

Dme-Mir-252-P2-v1

Family name MIR-252 (all species)
Seed UAAGUAC
Species Fruit fly (Drosophila melanogaster)
MiRBase ID dme-mir-252
Paralogues Dme-Mir-252-P1a  Dme-Mir-252-P1b  Dme-Mir-252-P2-v2 
Orthologues Aae-Mir-252-P2  Aga-Mir-252-P2  Agr-Mir-252-P2  Bfl-Mir-252-P2  Bge-Mir-252-P2-v1  Bge-Mir-252-P2-v2  Bla-Mir-252-P2  Cbr-Mir-252-P2  Cel-Mir-252-P2  Csc-Mir-252-P2k  Csc-Mir-252-P2l-v1  Csc-Mir-252-P2l-v2  Cte-Mir-252-P2  Dan-Mir-252-P2-v1  Dan-Mir-252-P2-v2  Dlo-Mir-252-P2  Dma-Mir-252-P2-v1  Dma-Mir-252-P2-v2  Dmo-Mir-252-P2-v1  Dmo-Mir-252-P2-v2  Dpu-Mir-252-P2-v1  Dpu-Mir-252-P2-v2  Dsi-Mir-252-P2-v1  Dsi-Mir-252-P2-v2  Dya-Mir-252-P2-v1  Dya-Mir-252-P2-v2  Eba-Mir-252-P2  Gpa-Mir-252-P2  Hme-Mir-252-P2  Hru-Mir-252-P2  Isc-Mir-252-P2-v1  Isc-Mir-252-P2-v2  Lan-Mir-252-P2  Lgi-Mir-252-P2  Llo-Mir-252-P2  Lpo-Mir-252-P2c  Lpo-Mir-252-P2d  Mgi-Mir-252-P2  Mom-Mir-252-P2  Npo-Mir-252-P2  Ofu-Mir-252-P2  Pau-Mir-252-P2  Pcr-Mir-252-P2  Pdu-Mir-252-P2  Pfl-Mir-252-P2  Pmi-Mir-252-P2  Pve-Mir-252-P2  Sko-Mir-252-P2  Snu-Mir-252-P2  Spu-Mir-252-P2  Tca-Mir-252-P2  Tur-Mir-252-P2-v1  Tur-Mir-252-P2-v2  War-Mir-252-P2  Xbo-Mir-252-P2 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Drosophila_melanogaster_BDGP6)
3R: 13464230-13464296 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-252-P2-v1)
Mir-252-P2-v1 3R: 13464230-13464296 [-] UCSC Ensembl
Mir-252-P2-v2 3R: 13464231-13464295 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUGUGCCGCCUACUUACCAAGUUCGCUUUCCUAAGUACUAGUGCCGCAGGAGUUAGGUUCGUGUCCGCAAUACCUCCUGCUGCCCAAGUGCUUAUUAAAGCGGCGAGUUGCCCAGCAAAAGAAUACA
Get precursor sequence
Structure
        10        20           30        40        50        60   
GUGUGCCGCCUACUUACCAA---| U      CC        AGU  C       UUAGGUUCGU 
                       GU CGCUUU  UAAGUACU   GC GCAGGAG          \
                       CG GCGAAA  AUUCGUGA   CG CGUCCUC          G
ACAUAAGAAAACGACCCGUUGAG^ -      UU        ACC  U       CAUAACGCCU 
     120       110        100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bo He He La Ov Sa Wh
Mature sequence

Dme-Mir-252-P2-v1_5p

mirBase accessionMIMAT0005516
Sequence
0- CUAAGUACUAGUGCCGCAGGAGU -23
Get sequence
Proposed targets microrna.org: MIMAT0005516
TargetScanFly: dme-miR-252
Star sequence

Dme-Mir-252-P2-v1_3p*

mirBase accessionMIMAT0020896
Sequence
44- UCCUGCUGCCCAAGUGCUUAUUA -67
Get sequence