MirGeneDB 3.0

MirGeneDB ID

Bge-Mir-252-P2-v1

Family name MIR-252 (all species)
Seed UAAGUAC
Species Cockroach (Blattella germanica)
MiRBase ID
Paralogues Bge-Mir-252-P1  Bge-Mir-252-P2-v2 
Orthologues Aae-Mir-252-P2  Aga-Mir-252-P2  Agr-Mir-252-P2  Bfl-Mir-252-P2  Bla-Mir-252-P2  Cbr-Mir-252-P2  Cel-Mir-252-P2  Csc-Mir-252-P2k  Csc-Mir-252-P2l-v1  Csc-Mir-252-P2l-v2  Cte-Mir-252-P2  Dan-Mir-252-P2-v1  Dan-Mir-252-P2-v2  Dlo-Mir-252-P2  Dma-Mir-252-P2-v1  Dma-Mir-252-P2-v2  Dme-Mir-252-P2-v1  Dme-Mir-252-P2-v2  Dmo-Mir-252-P2-v1  Dmo-Mir-252-P2-v2  Dpu-Mir-252-P2-v1  Dpu-Mir-252-P2-v2  Dsi-Mir-252-P2-v1  Dsi-Mir-252-P2-v2  Dya-Mir-252-P2-v1  Dya-Mir-252-P2-v2  Eba-Mir-252-P2  Gpa-Mir-252-P2  Hme-Mir-252-P2  Hru-Mir-252-P2  Isc-Mir-252-P2-v1  Isc-Mir-252-P2-v2  Lan-Mir-252-P2  Lgi-Mir-252-P2  Llo-Mir-252-P2  Lpo-Mir-252-P2c  Lpo-Mir-252-P2d  Mgi-Mir-252-P2  Mom-Mir-252-P2  Npo-Mir-252-P2  Ofu-Mir-252-P2  Pau-Mir-252-P2  Pcr-Mir-252-P2  Pdu-Mir-252-P2  Pfl-Mir-252-P2  Pmi-Mir-252-P2  Pve-Mir-252-P2  Sko-Mir-252-P2  Snu-Mir-252-P2  Spu-Mir-252-P2  Tca-Mir-252-P2  Tur-Mir-252-P2-v1  Tur-Mir-252-P2-v2  War-Mir-252-P2  Xbo-Mir-252-P2 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Bger_2.0)
KZ617672.1: 79351-79412 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GGAGCACUGAAGACAAACCCUCUUCCGUUCCUAAGUACUAGUGCCGCAGGAGUGUGCUUGAGUAAUUUCUCCUGCUGCUCAAGUGCUUAUCAAUGGGAAGGGACGCCCUCCAAUGGAUGAGA
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Structure
        10           20        30        40        50        60
GGAGCACUGAAGACAAA---|   C       CC        AGU  C       UGUGCUU 
                    CCCU UUCCGUU  UAAGUACU   GC GCAGGAG       G
                    GGGA AGGGUAA  AUUCGUGA   CG CGUCCUC       A
AGAGUAGGUAACCUCCCGCA^   -       CU        ACU  U       UUUAAUG 
120       110       100         90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
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Mature sequence

Bge-Mir-252-P2-v1_5p

mirBase accessionNone
Sequence
0- CUAAGUACUAGUGCCGCAGGAGU -23
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Star sequence

Bge-Mir-252-P2-v1_3p*

mirBase accessionNone
Sequence
39- UCCUGCUGCUCAAGUGCUUAUCA -62
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