MirGeneDB 3.0

MirGeneDB ID

Dma-Mir-252-P2-v1

Family name MIR-252 (all species)
Seed UAAGUAC
Species Large common water flea (Daphnia magna)
MiRBase ID
Paralogues Dma-Mir-252-P1  Dma-Mir-252-P2-v2 
Orthologues Aae-Mir-252-P2  Aga-Mir-252-P2  Agr-Mir-252-P2  Bfl-Mir-252-P2  Bge-Mir-252-P2-v1  Bge-Mir-252-P2-v2  Bla-Mir-252-P2  Cbr-Mir-252-P2  Cel-Mir-252-P2  Csc-Mir-252-P2k  Csc-Mir-252-P2l-v1  Csc-Mir-252-P2l-v2  Cte-Mir-252-P2  Dan-Mir-252-P2-v1  Dan-Mir-252-P2-v2  Dlo-Mir-252-P2  Dme-Mir-252-P2-v1  Dme-Mir-252-P2-v2  Dmo-Mir-252-P2-v1  Dmo-Mir-252-P2-v2  Dpu-Mir-252-P2-v1  Dpu-Mir-252-P2-v2  Dsi-Mir-252-P2-v1  Dsi-Mir-252-P2-v2  Dya-Mir-252-P2-v1  Dya-Mir-252-P2-v2  Eba-Mir-252-P2  Gpa-Mir-252-P2  Hme-Mir-252-P2  Hru-Mir-252-P2  Isc-Mir-252-P2-v1  Isc-Mir-252-P2-v2  Lan-Mir-252-P2  Lgi-Mir-252-P2  Llo-Mir-252-P2  Lpo-Mir-252-P2c  Lpo-Mir-252-P2d  Mgi-Mir-252-P2  Mom-Mir-252-P2  Npo-Mir-252-P2  Ofu-Mir-252-P2  Pau-Mir-252-P2  Pcr-Mir-252-P2  Pdu-Mir-252-P2  Pfl-Mir-252-P2  Pmi-Mir-252-P2  Pve-Mir-252-P2  Sko-Mir-252-P2  Snu-Mir-252-P2  Spu-Mir-252-P2  Tca-Mir-252-P2  Tur-Mir-252-P2-v1  Tur-Mir-252-P2-v2  War-Mir-252-P2  Xbo-Mir-252-P2 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(DMA_ASM399081)
NC_046174.1: 8936495-8936562 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UGACUGAAGACAAAUAUUCCUACCCCGUUCCUAAGUACUCGUGCCGCAGGAGAGAUGUAUUAAUCUGCAAGUUCCUCCUGCUGCUCAAGUUCUUAACUAAUGGUUAUGGAAAAACCAUCGCAUUUAAA
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Structure
        10         20        30         40        50        60   
UGACUGAAGACAAAUAU-   UACC     CC-|   U   CGU  C       AGAUGUAUUA 
                  UCC    CCGUU   UAAG ACU   GC GCAGGAG          A
                  AGG    GGUAA   AUUC UGA   CG CGUCCUC          U
AAAUUUACGCUACCAAAA   UAUU     UCA^   U   ACU  U       CUUGAACGUC 
      120       110       100        90        80        70
Deep sequencing
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CommentThere is a second Dicer cut +1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
01 02 03 04 05 06 07 08 09 10 11 12 13 14
Mature sequence

Dma-Mir-252-P2-v1_5p

mirBase accessionNone
Sequence
0- CUAAGUACUCGUGCCGCAGGAG -22
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Star sequence

Dma-Mir-252-P2-v1_3p*

mirBase accessionNone
Sequence
46- CCUGCUGCUCAAGUUCUUAACU -68
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