MirGeneDB 3.0
MirGeneDB ID

Csc-Mir-252-P2l-v1

Family name MIR-252 (all species)
Seed UAAGUAC
Species Arizona bark scorpion (Centruroides sculpturatus)
MiRBase ID
Paralogues Csc-Mir-252-P1k  Csc-Mir-252-P1l  Csc-Mir-252-P2k  Csc-Mir-252-P2l-v2 
Orthologues Aae-Mir-252-P2  Aga-Mir-252-P2  Agr-Mir-252-P2  Bfl-Mir-252-P2  Bge-Mir-252-P2-v1  Bge-Mir-252-P2-v2  Bla-Mir-252-P2  Cbr-Mir-252-P2  Cel-Mir-252-P2  Cte-Mir-252-P2  Dan-Mir-252-P2-v1  Dan-Mir-252-P2-v2  Dlo-Mir-252-P2  Dma-Mir-252-P2-v1  Dma-Mir-252-P2-v2  Dme-Mir-252-P2-v1  Dme-Mir-252-P2-v2  Dmo-Mir-252-P2-v1  Dmo-Mir-252-P2-v2  Dpu-Mir-252-P2-v1  Dpu-Mir-252-P2-v2  Dsi-Mir-252-P2-v1  Dsi-Mir-252-P2-v2  Dya-Mir-252-P2-v1  Dya-Mir-252-P2-v2  Eba-Mir-252-P2  Gpa-Mir-252-P2  Hme-Mir-252-P2  Hru-Mir-252-P2  Isc-Mir-252-P2-v1  Isc-Mir-252-P2-v2  Lan-Mir-252-P2  Lgi-Mir-252-P2  Llo-Mir-252-P2  Mgi-Mir-252-P2  Mom-Mir-252-P2  Npo-Mir-252-P2  Ofu-Mir-252-P2  Pau-Mir-252-P2  Pcr-Mir-252-P2  Pdu-Mir-252-P2  Pfl-Mir-252-P2  Pmi-Mir-252-P2  Pve-Mir-252-P2  Sko-Mir-252-P2  Snu-Mir-252-P2  Spu-Mir-252-P2  Tca-Mir-252-P2  Tur-Mir-252-P2-v1  Tur-Mir-252-P2-v2  War-Mir-252-P2  Xbo-Mir-252-P2 
Node of Origin (locus) C. sculpturatus
Node of Origin (family) Bilateria
Genome context
(GCF_000671375.1_CSC)		 NW_019384413.1: 883437-883499 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UUACAGUGGUGUGGCCCGUACUGGUCCGUUCUAAGUACUAGCGCCGCAGGAGUGUGAUGAUCUUAUUCACCCCUGCAGUCUUGGUACUUAACACGGGACAGUCGUAUCUCAUCUUACAACAUG
Get precursor sequence
Structure
        10           20        30        40        50        60 
UUACAGUGGUGUGGCCC---|U    GU    UC          C  C     A  GUGAUGA 
                    G ACUG  CCGU  UAAGUACUAG GC GCAGG GU       \
                    C UGAC  GGCA  AUUCAUGGUU UG CGUCC CA       U
GUACAACAUUCUACUCUAUG^-    AG    CA          C  A     C  CUUAUUC 
 120       110        100        90        80        70
Deep sequencing
Go to detailed chart
CommentThere is a second Dicer cut -1 on the 3p arm.
3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Fe Fe Fe Fe Ma Ma Ma
Mature sequence

Csc-Mir-252-P2l-v1_5p
mirBase accessionNone
Sequence 
0- CUAAGUACUAGCGCCGCAGGAGU -23
Get sequence
Star sequence

Csc-Mir-252-P2l-v1_3p*
mirBase accessionNone
Sequence 
39- CCCCUGCAGUCUUGGUACUUAACA -63
Get sequence