MirGeneDB 2.1

MirGeneDB ID

Pfl-Mir-252-P2

Family name MIR-252 (all species)
Seed UAAGUAC
Species Ptychodera (Ptychodera flava)
MiRBase ID
Paralogues Pfl-Mir-252-P1 
Orthologues Aae-Mir-252-P2  Bfl-Mir-252-P2  Bge-Mir-252-P2-v1  Bge-Mir-252-P2-v2  Bla-Mir-252-P2  Cbr-Mir-252-P2  Cel-Mir-252-P2  Cgi-Mir-252-P2  Csc-Mir-252-P2  Cte-Mir-252-P2  Dan-Mir-252-P2-v1  Dan-Mir-252-P2-v2  Dma-Mir-252-P2  Dme-Mir-252-P2-v1  Dme-Mir-252-P2-v2  Dmo-Mir-252-P2-v1  Dmo-Mir-252-P2-v2  Dpu-Mir-252-P2-v1  Dpu-Mir-252-P2-v2  Dsi-Mir-252-P2-v1  Dsi-Mir-252-P2-v2  Dya-Mir-252-P2-v1  Dya-Mir-252-P2-v2  Hme-Mir-252-P2  Isc-Mir-252-P2-v1  Isc-Mir-252-P2-v2  Lan-Mir-252-P2  Lgi-Mir-252-P2  Lpo-Mir-252-P2c  Lpo-Mir-252-P2d  Npo-Mir-252-P2  Pmi-Mir-252-P2  Sko-Mir-252-P2  Spu-Mir-252-P2  Tca-Mir-252-P2  Xbo-Mir-252-P2g  Xbo-Mir-252-P2h 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Pfl)
LD368470.1: 41174-41234 [+]
Precursor
(pre-Mir +30nt flank)
GAUAUUUCUGACAUGAUGGCUGUUCCGAUACUAAGUACUAGUGCCGCAGGAGUGCACAUCUGAGAAAACCCUGUUGUACUCGUACUUAACAUAGGCUCGGCCGAUCUACAACGCUAACUUU
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Structure
        10          20        30        40        50        60
GAUAUUUCUGACAUGAU--|    UU  GAUAC       U     C     A  GCACAU 
                   GGCUG  CC     UAAGUAC AGUGC GCAGG GU      C
                   CCGGC  GG     AUUCAUG UCAUG UGUCC CA      U
UUUCAAUCGCAACAUCUAG^    UC  AUACA       C     U     -  AAAGAG 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Pfl-Mir-252-P2_5p

mirBase accessionNone
Sequence
0- CUAAGUACUAGUGCCGCAGGAGU -23
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Star sequence

Pfl-Mir-252-P2_3p*

mirBase accessionNone
Sequence
38- CCCUGUUGUACUCGUACUUAACA -61
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