MirGeneDB ID | Pfl-Mir-252-P2 |
Family name |
MIR-252 (all species) |
Seed |
UAAGUAC |
Species |
Ptychodera (Ptychodera flava) |
MiRBase ID |
|
Paralogues |
Pfl-Mir-252-P1
|
Orthologues |
Aae-Mir-252-P2
Bfl-Mir-252-P2
Bge-Mir-252-P2-v1
Bge-Mir-252-P2-v2
Bla-Mir-252-P2
Cbr-Mir-252-P2
Cel-Mir-252-P2
Cgi-Mir-252-P2
Csc-Mir-252-P2
Cte-Mir-252-P2
Dan-Mir-252-P2-v1
Dan-Mir-252-P2-v2
Dma-Mir-252-P2
Dme-Mir-252-P2-v1
Dme-Mir-252-P2-v2
Dmo-Mir-252-P2-v1
Dmo-Mir-252-P2-v2
Dpu-Mir-252-P2-v1
Dpu-Mir-252-P2-v2
Dsi-Mir-252-P2-v1
Dsi-Mir-252-P2-v2
Dya-Mir-252-P2-v1
Dya-Mir-252-P2-v2
Hme-Mir-252-P2
Isc-Mir-252-P2-v1
Isc-Mir-252-P2-v2
Lan-Mir-252-P2
Lgi-Mir-252-P2
Lpo-Mir-252-P2c
Lpo-Mir-252-P2d
Npo-Mir-252-P2
Pmi-Mir-252-P2
Sko-Mir-252-P2
Spu-Mir-252-P2
Tca-Mir-252-P2
Xbo-Mir-252-P2g
Xbo-Mir-252-P2h
|
Node of Origin (locus) |
Bilateria
|
Node of Origin (family) |
Bilateria
|
Genome context (Pfl) |
LD368470.1: 41174-41234 [+]
|
Precursor (pre-Mir +30nt flank) |
GAUAUUUCUGACAUGAUGGCUGUUCCGAUACUAAGUACUAGUGCCGCAGGAGUGCACAUCUGAGAAAACCCUGUUGUACUCGUACUUAACAUAGGCUCGGCCGAUCUACAACGCUAACUUU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GAUAUUUCUGACAUGAU--| UU GAUAC U C A GCACAU
GGCUG CC UAAGUAC AGUGC GCAGG GU C
CCGGC GG AUUCAUG UCAUG UGUCC CA U
UUUCAAUCGCAACAUCUAG^ UC AUACA C U - AAAGAG
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Pfl-Mir-252-P2_5p |
mirBase accession | None |
Sequence |
0- CUAAGUACUAGUGCCGCAGGAGU -23
Get sequence
|
Star sequence |
Pfl-Mir-252-P2_3p* |
mirBase accession | None |
Sequence |
38- CCCUGUUGUACUCGUACUUAACA -61
Get sequence
|