MirGeneDB 3.0
MirGeneDB ID

Bfl-Mir-252-P2

Family name MIR-252 (all species)
Seed UAAGUAC
Species Florida lancelet (Branchiostoma floridae)
MiRBase ID bfl-mir-252a
Paralogues Bfl-Mir-252-P1-v1  Bfl-Mir-252-P1-v2 
Orthologues Aae-Mir-252-P2  Aga-Mir-252-P2  Agr-Mir-252-P2  Bge-Mir-252-P2-v1  Bge-Mir-252-P2-v2  Bla-Mir-252-P2  Cbr-Mir-252-P2  Cel-Mir-252-P2  Csc-Mir-252-P2k  Csc-Mir-252-P2l-v1  Csc-Mir-252-P2l-v2  Cte-Mir-252-P2  Dan-Mir-252-P2-v1  Dan-Mir-252-P2-v2  Dlo-Mir-252-P2  Dma-Mir-252-P2-v1  Dma-Mir-252-P2-v2  Dme-Mir-252-P2-v1  Dme-Mir-252-P2-v2  Dmo-Mir-252-P2-v1  Dmo-Mir-252-P2-v2  Dpu-Mir-252-P2-v1  Dpu-Mir-252-P2-v2  Dsi-Mir-252-P2-v1  Dsi-Mir-252-P2-v2  Dya-Mir-252-P2-v1  Dya-Mir-252-P2-v2  Eba-Mir-252-P2  Gpa-Mir-252-P2  Hme-Mir-252-P2  Hru-Mir-252-P2  Isc-Mir-252-P2-v1  Isc-Mir-252-P2-v2  Lan-Mir-252-P2  Lgi-Mir-252-P2  Llo-Mir-252-P2  Lpo-Mir-252-P2c  Lpo-Mir-252-P2d  Mgi-Mir-252-P2  Mom-Mir-252-P2  Npo-Mir-252-P2  Ofu-Mir-252-P2  Pau-Mir-252-P2  Pcr-Mir-252-P2  Pdu-Mir-252-P2  Pfl-Mir-252-P2  Pmi-Mir-252-P2  Pve-Mir-252-P2  Sko-Mir-252-P2  Snu-Mir-252-P2  Spu-Mir-252-P2  Tca-Mir-252-P2  Tur-Mir-252-P2-v1  Tur-Mir-252-P2-v2  War-Mir-252-P2  Xbo-Mir-252-P2 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)		 NC_049982.1: 20092666-20092725 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-252-P2)		 Mir-252-P2 NC_049982.1: 20092666-20092725 [-] UCSC
Mir-252-P1-v2 NC_049982.1: 20093381-20093449 [-] UCSC
Mir-252-P1-v1 NC_049982.1: 20093383-20093447 [-] UCSC
Precursor
(pre-Mir +30nt flank)
CAGAAGCACCAGUGAUUGGCCUGCCCCAUGCUAAGUACUAGUGCCGCAGGUGUCUGUGUUUAUUGUACCCCUGCAGACUGGUGCUUAACGUGGAACAGGUAAUAAUGACACCUAGCUAUU
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Structure
        10          20        30        40        50          
CAGAAGCACCAGUGAUUG--|    CC     C           GCC     U  CUGUGU 
                    GCCUG  CCAUG UAAGUACUAGU   GCAGG GU      \
                    UGGAC  GGUGC AUUCGUGGUCA   CGUCC CA      U
UUAUCGAUCCACAGUAAUAA^    AA     A           GA-     C  UGUUAU 
.       110       100        90        80         70
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14)
Tissue expression
-   +
To
Mature sequence

Bfl-Mir-252-P2_5p
mirBase accessionMIMAT0009498
Sequence 
0- CUAAGUACUAGUGCCGCAGGUGU -23
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Star sequence

Bfl-Mir-252-P2_3p* (predicted)
mirBase accessionNone
Sequence 
37- CCCCUGCAGACUGGUGCUUAACG -60
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