MirGeneDB 2.1

MirGeneDB ID

Lpo-Mir-252-P2c

Family name MIR-252 (all species)
Seed UAAGUAC
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-252-P1c  Lpo-Mir-252-P1e  Lpo-Mir-252-P1f  Lpo-Mir-252-P2d 
Orthologues Aae-Mir-252-P2  Bfl-Mir-252-P2  Bge-Mir-252-P2-v1  Bge-Mir-252-P2-v2  Bla-Mir-252-P2  Cbr-Mir-252-P2  Cel-Mir-252-P2  Cgi-Mir-252-P2  Csc-Mir-252-P2  Cte-Mir-252-P2  Dan-Mir-252-P2-v1  Dan-Mir-252-P2-v2  Dma-Mir-252-P2  Dme-Mir-252-P2-v1  Dme-Mir-252-P2-v2  Dmo-Mir-252-P2-v1  Dmo-Mir-252-P2-v2  Dpu-Mir-252-P2-v1  Dpu-Mir-252-P2-v2  Dsi-Mir-252-P2-v1  Dsi-Mir-252-P2-v2  Dya-Mir-252-P2-v1  Dya-Mir-252-P2-v2  Hme-Mir-252-P2  Isc-Mir-252-P2-v1  Isc-Mir-252-P2-v2  Lan-Mir-252-P2  Lgi-Mir-252-P2  Npo-Mir-252-P2  Pfl-Mir-252-P2  Pmi-Mir-252-P2  Sko-Mir-252-P2  Spu-Mir-252-P2  Tca-Mir-252-P2 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Bilateria
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)
NW_013676376.1: 17174-17232 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AUAUUUGACGAACGAGUAGAGAACCCAAUUCUAAGUACUAGCGCCGCAGGAGUCUUAUUCAAUACCUCCUGCAGCCUUAGUGCUUACCAUGGGGUAGUCACUUCUCAGCUCAUCAUUGC
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Structure
        10          20        30        40        50         
AUAUUUGACGAACGAGUA--| GA    AAUUC          C  C       UCUUAU 
                    GA  ACCC     UAAGUACUAG GC GCAGGAG      \
                    CU  UGGG     AUUCGUGAUU CG CGUCCUC      U
CGUUACUACUCGACUCUUCA^ GA    GUACC          C  A       CAUAAC 
       110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
Fe Fe Fe Ma Ma To
Mature sequence

Lpo-Mir-252-P2c_5p

mirBase accessionNone
Sequence
0- CUAAGUACUAGCGCCGCAGGAG -22
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Star sequence

Lpo-Mir-252-P2c_3p* (predicted)

mirBase accessionNone
Sequence
37- CCUGCAGCCUUAGUGCUUACCA -59
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