MirGeneDB 3.0

MirGeneDB ID

Dan-Mir-252-P2-v1

Family name MIR-252 (all species)
Seed UAAGUAC
Species Fruit fly (Drosophila ananassae)
MiRBase ID
Paralogues Dan-Mir-252-P1a  Dan-Mir-252-P1b  Dan-Mir-252-P2-v2 
Orthologues Aae-Mir-252-P2  Aga-Mir-252-P2  Agr-Mir-252-P2  Bfl-Mir-252-P2  Bge-Mir-252-P2-v1  Bge-Mir-252-P2-v2  Bla-Mir-252-P2  Cbr-Mir-252-P2  Cel-Mir-252-P2  Csc-Mir-252-P2k  Csc-Mir-252-P2l-v1  Csc-Mir-252-P2l-v2  Cte-Mir-252-P2  Dlo-Mir-252-P2  Dma-Mir-252-P2-v1  Dma-Mir-252-P2-v2  Dme-Mir-252-P2-v1  Dme-Mir-252-P2-v2  Dmo-Mir-252-P2-v1  Dmo-Mir-252-P2-v2  Dpu-Mir-252-P2-v1  Dpu-Mir-252-P2-v2  Dsi-Mir-252-P2-v1  Dsi-Mir-252-P2-v2  Dya-Mir-252-P2-v1  Dya-Mir-252-P2-v2  Eba-Mir-252-P2  Gpa-Mir-252-P2  Hme-Mir-252-P2  Hru-Mir-252-P2  Isc-Mir-252-P2-v1  Isc-Mir-252-P2-v2  Lan-Mir-252-P2  Lgi-Mir-252-P2  Llo-Mir-252-P2  Lpo-Mir-252-P2c  Lpo-Mir-252-P2d  Mgi-Mir-252-P2  Mom-Mir-252-P2  Npo-Mir-252-P2  Ofu-Mir-252-P2  Pau-Mir-252-P2  Pcr-Mir-252-P2  Pdu-Mir-252-P2  Pfl-Mir-252-P2  Pmi-Mir-252-P2  Pve-Mir-252-P2  Sko-Mir-252-P2  Snu-Mir-252-P2  Spu-Mir-252-P2  Tca-Mir-252-P2  Tur-Mir-252-P2-v1  Tur-Mir-252-P2-v2  War-Mir-252-P2  Xbo-Mir-252-P2 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Dana_caf1)
scaffold_13340: 1848689-1848755 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
ACUUACAUUACUUCCUGCGAAGUCGCUUUCCUAAGUACUAGUGCCGCAGGAGUUAGGUUCGUGUCCGCAAUACCUCCUGCUGCCCAAGUGCUUAUUAAAGCGGCGAGUUGUCCAGCAAAAUACAAGG
Get precursor sequence
Structure
        10        20          30        40        50        60   
ACUUACAUUACUUCCUGCGAA--|       CC        AGU  C       UUAGGUUCGU 
                       GUCGCUUU  UAAGUACU   GC GCAGGAG          \
                       CGGCGAAA  AUUCGUGA   CG CGUCCUC          G
GGAACAUAAAACGACCUGUUGAG^       UU        ACC  U       CAUAACGCCU 
     120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Fe
Mature sequence

Dan-Mir-252-P2-v1_5p

mirBase accessionNone
Sequence
0- CUAAGUACUAGUGCCGCAGGAGU -23
Get sequence
Star sequence

Dan-Mir-252-P2-v1_3p*

mirBase accessionNone
Sequence
45- CCUGCUGCCCAAGUGCUUAUUA -67
Get sequence