Mir-252-P1a

MirGeneDB ID

Dan-Mir-252-P1a

Family name

MIR-252 (all species)

Seed

AAGUAGU

Species

Fruit fly (Drosophila ananassae)

MiRBase ID

Paralogues

Dan-Mir-252-P1b Dan-Mir-252-P2-v1 Dan-Mir-252-P2-v2

Orthologues

Agr-Mir-252-P1 Asu-Mir-252-P1 Bfl-Mir-252-P1-v1 Bfl-Mir-252-P1-v2 Bge-Mir-252-P1 Bla-Mir-252-P1-v1 Bla-Mir-252-P1-v2 Cbr-Mir-252-P1 Cel-Mir-252-P1 Cte-Mir-252-P1 Dgr-Mir-252-P1 Dlo-Mir-252-P1 Dma-Mir-252-P1 Dme-Mir-252-P1a Dmo-Mir-252-P1a Dpu-Mir-252-P1 Dsi-Mir-252-P1a Dya-Mir-252-P1a Eba-Mir-252-P1 Esc-Mir-252-P1 Hme-Mir-252-P1 Hmi-Mir-252-P1 Hru-Mir-252-P1 Isc-Mir-252-P1 Lan-Mir-252-P1 Lgi-Mir-252-P1 Lhy-Mir-252-P1 Llo-Mir-252-P1 Mgi-Mir-252-P1 Mom-Mir-252-P1 Npo-Mir-252-P1 Obi-Mir-252-P1 Ofu-Mir-252-P1 Ovu-Mir-252-P1 Pau-Mir-252-P1 Pca-Mir-252-P1 Pdu-Mir-252-P1 Pfl-Mir-252-P1 Pmi-Mir-252-P1 Rph-Mir-252-P1 Sko-Mir-252-P1 Snu-Mir-252-P1 Spu-Mir-252-P1 Tca-Mir-252-P1 Tur-Mir-252-P1 War-Mir-252-P1

Node of Origin (locus)

Drosophila

Node of Origin (family)

Bilateria

Genome context
(Dana_caf1)

scaffold_12943: 1815568-1815630 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

AGGUUGAAUCCUAAAUUAUGGCAGUUUCCUUAAGUAGUAUCCAUUAAAGGGUCGUUAAUAUAUUCAAAGUGACCGUUUGAUGUACUACUUUAGGUAGCUCCAUUUAAAGUCGGCUAAAAUAAG

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Structure

        10           20        30        40        50        60  
AGGUUGAAUCCUAAAUU---|   C    U   U        UC       G     UUAAUAU 
                    AUGG AGUU CCU AAGUAGUA  CAUUAAA GGUCG       \
                    UACC UCGA GGA UUCAUCAU  GUAGUUU CCAGU       A
GAAUAAAAUCGGCUGAAAUU^   -    U   U        --       G     GAAACUU 
 120       110       100         90          80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Fe

Mature sequence

Dan-Mir-252-P1a_5p

mirBase accession

None

Sequence

0- UAAGUAGUAUCCAUUAAAGGGUCG -24

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Star sequence

Dan-Mir-252-P1a_3p*

mirBase accession

None

Sequence

41- ACCGUUUGAUGUACUACUUUAG -63

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